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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039841 ID=TCONS_00039841|Name=TCONS_00039841|organism=Clytia hemisphaerica|type=transcript|length=1160bp
GCCTGCTCCTTGTTAACGTTTTGTCCAGAATTTCATCAAATGGTCAAAGA
TGGTCAAAGTGCCCTTTGTCGGGTTGGTCTTAAATGCGGTTTGGAATGTG
GTGTTTTGTCCTCTCGGGACCTGTTAAATCGCGAACCTGATTCGGACTTT
GAGCGGGCATTGGAAGAAGTCCGAAAAGCAATGAGAAACGCTAAACATGG
CTTCTATAAAGGATCATTTTACGTCCTATACGAGGGTGCTCGATACGCAT
ATAGACGATTGAGCAGTGCCGAGGCGTACATGCACTCAATCATCAACATC
ACAAGTGATAAAGGAAAGTTTGCAAGATATGTCAATCAATTGACTGGATT
CTTTTCGAAGCCAGACTGTAACTTGGTCGAACAGCTATTCTTTGATTCCG
ACATAATCGAAACGTCTGGAGGAAAATTCTTTAAACTGTCCAGTATGCAG
TTTATACCATGTCCATACAAACAAGAAGACTTGGGAAAATATTCACCACG
CATATACAAGGAGCATCATAAAGATTTTGATTATAACTACTTTGCAGAGT
GCGTAGAAAACAGCATCGACACTCGAATAAAACGCACCACATTTCTAATC
AAATTTTATCAGTGTTTCTTGGCTAGCCAATTACCGATGAAAACGACCAA
ACCATTGCTCGTCGGAGACAAGAATTCCGGCAAGACGTCAATGGTAAAAG
TAATTACAAGCCTCACCCTCCCGGAGTTTTGGTGTACCATCTCTAAAGAG
AAAACCTTTGGTTTAAGTCAAATCCGGGACGACATCCAACTTGTTTTTCT
TGACGAATTTACGGAAAAATTTATGTCCGCAGATATGGCAAAGATATTCT
TTCAGGGCGGCAATCTCACCATATCACGGAAATTCAGTACACCAGAGTTG
ATTCAAAATAATGCAGGAATTTACATCACGTGCAACAAACTTCCGAACTA
CGGCTCCGACCAAGAAGATGTTGACGAGAGGTTCGACATCTACAAAATGC
AGAGACTGCCTTCCAAAAACACAAACGTCACCGATTGGATGTCCAAATAT
GCTTTCAATGTGCTACTTTGGATCGTGAAAGAGATCAAAGAGAACCTTAG
TCCAATCCACCAGCCGGAAATGTTTTTCCTCAGAGACAGCAACGACTTCA
TCCCTCGAAA Run BLAST on NCBI protein sequence of TCONS_00039841-protein >TCONS_00039841-protein ID=TCONS_00039841-protein|Name=TCONS_00039841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
ACSLLTFCPEFHQMVKDGQSALCRVGLKCGLECGVLSSRDLLNREPDSDF
ERALEEVRKAMRNAKHGFYKGSFYVLYEGARYAYRRLSSAEAYMHSIINI
TSDKGKFARYVNQLTGFFSKPDCNLVEQLFFDSDIIETSGGKFFKLSSMQ
FIPCPYKQEDLGKYSPRIYKEHHKDFDYNYFAECVENSIDTRIKRTTFLI
KFYQCFLASQLPMKTTKPLLVGDKNSGKTSMVKVITSLTLPEFWCTISKE
KTFGLSQIRDDIQLVFLDEFTEKFMSADMAKIFFQGGNLTISRKFSTPEL
IQNNAGIYITCNKLPNYGSDQEDVDERFDIYKMQRLPSKNTNVTDWMSKY
AFNVLLWIVKEIKENLSPIHQPEMFFLRDSNDFIPR Run BLAST on NCBI transcript from alignment at sc0002216:2734..4266- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039841 ID=TCONS_00039841|Name=TCONS_00039841|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0002216:2734..4266- (Clytia hemisphaerica)
GCCTGCTCCTTGTTAACGTTTTGTCCAGAATTTCATCAAATGGTCAAAGA
TGGTCAAAGTGCCCTTTGTCGGGTTGGTCTTAAATGCGGTTTGGAATGTG
GTGTTTTGTCCTCTCGGGACCTGTTAAATCGCGAACCTGATTCGGACTTT
GAGCGGGCATTGGAAGAAGTCCGAAAAGCAATGAGAAACGCTAAACATGG
CTTCTATAAAGGATCATTTTACGTCCTATACGAGGGTGGTGAGTTATCTT
TTTTGACTGTTTTTATATTTTGGCGCTTGATTCAAAAAGGTTGACAAAAA
TGACTCATGAGTTTATTTTCTTATTTTAAAGCTCGATACGCATATAGACG
ATTGAGCAGTGCCGAGGCGTACATGCACTCAATCATCAACATCACAAGTG
ATAAAGGAAAGTTTGCAAGATATGTCAATCAATTGACTGGATTCTTTTCG
AAGCCAGACTGTAACGTAAGTATTTGTCTAAAATCTTATATCACCTAGAC
GTTTTTTGTACAAATAATGTCTTATTTAGCACCGTTGGACAAATGAAGTT
GTAACCATTTTTAACTATTCCAATTTTTTAGTTGGTCGAACAGCTATTCT
TTGATTCCGACATAATCGAAACGTCTGGAGGAAAATTCTTTAAACTGTCC
AGTATGCAGTTTATACCATGTCCATACAAACAAGAAGACTTGGGAAAATA
TTCACCACGCATATACAAGGAGCATCATAAAGATTTTGATTATAACTACT
TTGCAGAGTGCGTAGAAAACAGCATCGACACTCGAATAAAACGCACCACA
TTTCTAATCAAATTTTATCAGTGTTTCTTGGCTAGCCAATTACCGATGAA
AACGACCAAACCATTGCTCGTCGGAGACAAGAATTCCGGCAAGACGTCAA
TGGTAAAAGTAATTACAAGCCTCACCCTCCCGGAGTTTTGGTGTACCATC
TCTAAAGAGAAAACCTTTGGTTTAAGTCAAATCCGGGACGACATCCAACT
TGTTTTTCTTGACGAATTTACGGAAAAATTTATGTCCGCAGATATGGCAA
AGATATTCTTTCAGGGCGGCAATCTCACCATATCACGGAAATTCAGTACA
CCAGAGTTGATTCAAAATAATGCAGGTCAGTAAAAATCGATGATAAACTA
GCTTTGTAATTATCAATCCGTATAAAAATTGATTACGCCATACTTGAAGA
TAACGGTAAGAGGGGCTCTCACATCTTTCCGCTTTTGGTAATTTGAAGTT
TAATATTAACAAAAATATCTGACTTCCCTCTCTGTTCAGGAATTTACATC
ACGTGCAACAAACTTCCGAACTACGGCTCCGACCAAGAAGATGTTGACGA
GAGGTTCGACATCTACAAAATGCAGAGACTGCCTTCCAAAAACACAAACG
TCACCGATTGGATGTCCAAATATGCTTTCAATGTGCTACTTTGGATCGTG
AAAGAGATCAAAGAGAACCTTAGTCCAATCCACCAGCCGGAAATGTTTTT
CCTCAGAGACAGCAACGACTTCATCCCTCGAAA Coding sequence (CDS) from alignment at sc0002216:2734..4266- >TCONS_00039841 ID=TCONS_00039841|Name=TCONS_00039841|organism=Clytia hemisphaerica|type=CDS|length=4632bp|location=Sequence derived from alignment at sc0002216:2734..4266- (Clytia hemisphaerica)
GAATTTACATCACGTGCAACAAACTTCCGAACTACGGCTCCGACCAAGAA
GATGTTGACGAGAGGTTCGACATCTACAAAATGCAGAGACTGCCTTCCAA
AAACACAAACGTCACCGATTGGATGTCCAAATATGCTTTCAATGTGCTAC
TTTGGATCGTGAAAGAGATCAAAGAGAACCTTAGTCCAATCCACCAGCCG
GAAATGTTTTTCCTCAGAGACAGCAACGACTTCATCCCTCGATTGGTCGA
ACAGCTATTCTTTGATTCCGACATAATCGAAACGTCTGGAGGAAAATTCT
TTAAACTGTCCAGTATGCAGTTTATACCATGTCCATACAAACAAGAAGAC
TTGGGAAAATATTCACCACGCATATACAAGGAGCATCATAAAGATTTTGA
TTATAACTACTTTGCAGAGTGCGTAGAAAACAGCATCGACACTCGAATAA
AACGCACCACATTTCTAATCAAATTTTATCAGTGTTTCTTGGCTAGCCAA
TTACCGATGAAAACGACCAAACCATTGCTCGTCGGAGACAAGAATTCCGG
CAAGACGTCAATGGTAAAAGTAATTACAAGCCTCACCCTCCCGGAGTTTT
GGTGTACCATCTCTAAAGAGAAAACCTTTGGTTTAAGTCAAATCCGGGAC
GACATCCAACTTGTTTTTCTTGACGAATTTACGGAAAAATTTATGTCCGC
AGATATGGCAAAGATATTCTTTCAGGGCGGCAATCTCACCATATCACGGA
AATTCAGTACACCAGAGTTGATTCAAAATAATGCAGCTCGATACGCATAT
AGACGATTGAGCAGTGCCGAGGCGTACATGCACTCAATCATCAACATCAC
AAGTGATAAAGGAAAGTTTGCAAGATATGTCAATCAATTGACTGGATTCT
TTTCGAAGCCAGACTGTAACGCCTGCTCCTTGTTAACGTTTTGTCCAGAA
TTTCATCAAATGGTCAAAGATGGTCAAAGTGCCCTTTGTCGGGTTGGTCT
TAAATGCGGTTTGGAATGTGGTGTTTTGTCCTCTCGGGACCTGTTAAATC
GCGAACCTGATTCGGACTTTGAGCGGGCATTGGAAGAAGTCCGAAAAGCA
ATGAGAAACGCTAAACATGGCTTCTATAAAGGATCATTTTACGTCCTATA
CGAGGGTGGAATTTACATCACGTGCAACAAACTTCCGAACTACGGCTCCG
ACCAAGAAGATGTTGACGAGAGGTTCGACATCTACAAAATGCAGAGACTG
CCTTCCAAAAACACAAACGTCACCGATTGGATGTCCAAATATGCTTTCAA
TGTGCTACTTTGGATCGTGAAAGAGATCAAAGAGAACCTTAGTCCAATCC
ACCAGCCGGAAATGTTTTTCCTCAGAGACAGCAACGACTTCATCCCTCGA
TTGGTCGAACAGCTATTCTTTGATTCCGACATAATCGAAACGTCTGGAGG
AAAATTCTTTAAACTGTCCAGTATGCAGTTTATACCATGTCCATACAAAC
AAGAAGACTTGGGAAAATATTCACCACGCATATACAAGGAGCATCATAAA
GATTTTGATTATAACTACTTTGCAGAGTGCGTAGAAAACAGCATCGACAC
TCGAATAAAACGCACCACATTTCTAATCAAATTTTATCAGTGTTTCTTGG
CTAGCCAATTACCGATGAAAACGACCAAACCATTGCTCGTCGGAGACAAG
AATTCCGGCAAGACGTCAATGGTAAAAGTAATTACAAGCCTCACCCTCCC
GGAGTTTTGGTGTACCATCTCTAAAGAGAAAACCTTTGGTTTAAGTCAAA
TCCGGGACGACATCCAACTTGTTTTTCTTGACGAATTTACGGAAAAATTT
ATGTCCGCAGATATGGCAAAGATATTCTTTCAGGGCGGCAATCTCACCAT
ATCACGGAAATTCAGTACACCAGAGTTGATTCAAAATAATGCAGCTCGAT
ACGCATATAGACGATTGAGCAGTGCCGAGGCGTACATGCACTCAATCATC
AACATCACAAGTGATAAAGGAAAGTTTGCAAGATATGTCAATCAATTGAC
TGGATTCTTTTCGAAGCCAGACTGTAACGCCTGCTCCTTGTTAACGTTTT
GTCCAGAATTTCATCAAATGGTCAAAGATGGTCAAAGTGCCCTTTGTCGG
GTTGGTCTTAAATGCGGTTTGGAATGTGGTGTTTTGTCCTCTCGGGACCT
GTTAAATCGCGAACCTGATTCGGACTTTGAGCGGGCATTGGAAGAAGTCC
GAAAAGCAATGAGAAACGCTAAACATGGCTTCTATAAAGGATCATTTTAC
GTCCTATACGAGGGTGGAATTTACATCACGTGCAACAAACTTCCGAACTA
CGGCTCCGACCAAGAAGATGTTGACGAGAGGTTCGACATCTACAAAATGC
AGAGACTGCCTTCCAAAAACACAAACGTCACCGATTGGATGTCCAAATAT
GCTTTCAATGTGCTACTTTGGATCGTGAAAGAGATCAAAGAGAACCTTAG
TCCAATCCACCAGCCGGAAATGTTTTTCCTCAGAGACAGCAACGACTTCA
TCCCTCGATTGGTCGAACAGCTATTCTTTGATTCCGACATAATCGAAACG
TCTGGAGGAAAATTCTTTAAACTGTCCAGTATGCAGTTTATACCATGTCC
ATACAAACAAGAAGACTTGGGAAAATATTCACCACGCATATACAAGGAGC
ATCATAAAGATTTTGATTATAACTACTTTGCAGAGTGCGTAGAAAACAGC
ATCGACACTCGAATAAAACGCACCACATTTCTAATCAAATTTTATCAGTG
TTTCTTGGCTAGCCAATTACCGATGAAAACGACCAAACCATTGCTCGTCG
GAGACAAGAATTCCGGCAAGACGTCAATGGTAAAAGTAATTACAAGCCTC
ACCCTCCCGGAGTTTTGGTGTACCATCTCTAAAGAGAAAACCTTTGGTTT
AAGTCAAATCCGGGACGACATCCAACTTGTTTTTCTTGACGAATTTACGG
AAAAATTTATGTCCGCAGATATGGCAAAGATATTCTTTCAGGGCGGCAAT
CTCACCATATCACGGAAATTCAGTACACCAGAGTTGATTCAAAATAATGC
AGCTCGATACGCATATAGACGATTGAGCAGTGCCGAGGCGTACATGCACT
CAATCATCAACATCACAAGTGATAAAGGAAAGTTTGCAAGATATGTCAAT
CAATTGACTGGATTCTTTTCGAAGCCAGACTGTAACGCCTGCTCCTTGTT
AACGTTTTGTCCAGAATTTCATCAAATGGTCAAAGATGGTCAAAGTGCCC
TTTGTCGGGTTGGTCTTAAATGCGGTTTGGAATGTGGTGTTTTGTCCTCT
CGGGACCTGTTAAATCGCGAACCTGATTCGGACTTTGAGCGGGCATTGGA
AGAAGTCCGAAAAGCAATGAGAAACGCTAAACATGGCTTCTATAAAGGAT
CATTTTACGTCCTATACGAGGGTGGAATTTACATCACGTGCAACAAACTT
CCGAACTACGGCTCCGACCAAGAAGATGTTGACGAGAGGTTCGACATCTA
CAAAATGCAGAGACTGCCTTCCAAAAACACAAACGTCACCGATTGGATGT
CCAAATATGCTTTCAATGTGCTACTTTGGATCGTGAAAGAGATCAAAGAG
AACCTTAGTCCAATCCACCAGCCGGAAATGTTTTTCCTCAGAGACAGCAA
CGACTTCATCCCTCGATTGGTCGAACAGCTATTCTTTGATTCCGACATAA
TCGAAACGTCTGGAGGAAAATTCTTTAAACTGTCCAGTATGCAGTTTATA
CCATGTCCATACAAACAAGAAGACTTGGGAAAATATTCACCACGCATATA
CAAGGAGCATCATAAAGATTTTGATTATAACTACTTTGCAGAGTGCGTAG
AAAACAGCATCGACACTCGAATAAAACGCACCACATTTCTAATCAAATTT
TATCAGTGTTTCTTGGCTAGCCAATTACCGATGAAAACGACCAAACCATT
GCTCGTCGGAGACAAGAATTCCGGCAAGACGTCAATGGTAAAAGTAATTA
CAAGCCTCACCCTCCCGGAGTTTTGGTGTACCATCTCTAAAGAGAAAACC
TTTGGTTTAAGTCAAATCCGGGACGACATCCAACTTGTTTTTCTTGACGA
ATTTACGGAAAAATTTATGTCCGCAGATATGGCAAAGATATTCTTTCAGG
GCGGCAATCTCACCATATCACGGAAATTCAGTACACCAGAGTTGATTCAA
AATAATGCAGCTCGATACGCATATAGACGATTGAGCAGTGCCGAGGCGTA
CATGCACTCAATCATCAACATCACAAGTGATAAAGGAAAGTTTGCAAGAT
ATGTCAATCAATTGACTGGATTCTTTTCGAAGCCAGACTGTAACGCCTGC
TCCTTGTTAACGTTTTGTCCAGAATTTCATCAAATGGTCAAAGATGGTCA
AAGTGCCCTTTGTCGGGTTGGTCTTAAATGCGGTTTGGAATGTGGTGTTT
TGTCCTCTCGGGACCTGTTAAATCGCGAACCTGATTCGGACTTTGAGCGG
GCATTGGAAGAAGTCCGAAAAGCAATGAGAAACGCTAAACATGGCTTCTA
TAAAGGATCATTTTACGTCCTATACGAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039841-exon-sc0002216-1575043694:4029..4266 | TCONS_00039841-exon-sc0002216-1575043694:4029..4266 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1575043694:3802..3935 | TCONS_00039841-exon-sc0002216-1575043694:3802..3935 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1575043694:3142..3685 | TCONS_00039841-exon-sc0002216-1575043694:3142..3685 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1575043694:2734..2977 | TCONS_00039841-exon-sc0002216-1575043694:2734..2977 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1510915933:4029..4266 | TCONS_00039841-exon-sc0002216-1510915933:4029..4266 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1510915933:3802..3935 | TCONS_00039841-exon-sc0002216-1510915933:3802..3935 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1510915933:3142..3685 | TCONS_00039841-exon-sc0002216-1510915933:3142..3685 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1510915933:2734..2977 | TCONS_00039841-exon-sc0002216-1510915933:2734..2977 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1491911889:4029..4266 | TCONS_00039841-exon-sc0002216-1491911889:4029..4266 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1491911889:3802..3935 | TCONS_00039841-exon-sc0002216-1491911889:3802..3935 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1491911889:3142..3685 | TCONS_00039841-exon-sc0002216-1491911889:3142..3685 | Clytia hemisphaerica | exon |
| TCONS_00039841-exon-sc0002216-1491911889:2734..2977 | TCONS_00039841-exon-sc0002216-1491911889:2734..2977 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0002216 | supercontig | sc0002216:2734..4266 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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