TCONS_00039840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039840
Unique NameTCONS_00039840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039840 ID=TCONS_00039840|Name=TCONS_00039840|organism=Clytia hemisphaerica|type=transcript|length=1187bp
GTGACTTTGAACCATCAACCAAACAGCCAAAACAATCAACGGGCGAGATA
TTTGCGCAGCAGTACAACAATATAGAACTGCCAATGATGAGCGAATACAA
AACAAAGACTGGTAAAGAGCCGTTAAAAAGTCATCGCACATCCCGAAAAG
TACCAGAGAAAGCACCCATGAGTCAAGTGATGCAAGAAAATGTAGCTTCT
GGACAAGGGCAATCAACCAATTGCAATCTCCAAACAGTTAGCGACAGTAA
CCTGGAAACGTCGACAAACCAAGAACAAGCCAATGGTGCAGCTATTGAAA
AGCAGTATAAAGATATAGAACAACCGAAACCTGATCAATACAAGAAGCAG
AATGGGAAAGAACCGTTAAAAAGCCACCGTAATACTCCGCACCAACGTCA
ACAGATAGAGCCGGAAACTACACCTCAGGATCAATTGATACAAGATCCCG
ACATCACATCTAATACtgAAAGTGAAATCGACTCTGCCACTGAAAAACGA
CTTTTGGAATCAACCGATCTATCAGAAACCGAAGGCGAAGCAAGTTACAA
GCAGATGGCAACGCCCAAACTAGCCGCAAGTCCTCTACGAAAGGAGGAAA
TCCTCAGATTTAAACTGGGGAAAACAAGATACAAATTTGAAGATCTAAAC
TCTTACGAGTACTGGCGGGAGGTTAGAAAAGTTTTGGCCACAAACATGGG
CAGAAGAGAAAGATTAACCGGACATTATTATCTCAATTTTGATGACCACT
TTGAGCCAAAAGGGGGTGTGAAATGTCGCATCCCGAAACCCGAGTTCGAC
GCATGGTGCTTGGTGAAGGGAAAGGTCCGAGAAGGATTTGACATAAAGGG
ATTTTGTTTGTGCTACCCCAATATTGAGGAAGAGTTGAAACGTCTGAGAA
CGCTGATGACGATAATTGTAAACAGACCACCAATAAATAGTTAAAAAAca
tcttttgttgtttttcttttctagtCGGTAGACAATGATGTTTGAACGTT
CATATAACGGCAattattctttttcaccgttttCAACGTTTAAACAATGT
TGTGTACCAGCTGAGTCGTCTCTTATTTCCCAGTTCTAAGATAAAGTAAC
TTTaggatttgattgaaaaatagaaaaaggagCCTTTTTTAAGACATGCA
TCAATTTATCATCATAAAGTCATAATTTTAGAGGAAA
Run BLAST on NCBI

protein sequence of TCONS_00039840-protein

>TCONS_00039840-protein ID=TCONS_00039840-protein|Name=TCONS_00039840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
DFEPSTKQPKQSTGEIFAQQYNNIELPMMSEYKTKTGKEPLKSHRTSRKV
PEKAPMSQVMQENVASGQGQSTNCNLQTVSDSNLETSTNQEQANGAAIEK
QYKDIEQPKPDQYKKQNGKEPLKSHRNTPHQRQQIEPETTPQDQLIQDPD
ITSNTESEIDSATEKRLLESTDLSETEGEASYKQMATPKLAASPLRKEEI
LRFKLGKTRYKFEDLNSYEYWREVRKVLATNMGRRERLTGHYYLNFDDHF
EPKGGVKCRIPKPEFDAWCLVKGKVREGFDIKGFCLCYPNIEEELKRLRT
LMTIIVNRPPINS
Run BLAST on NCBI

transcript from alignment at sc0002216:457..2357-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039840 ID=TCONS_00039840|Name=TCONS_00039840|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at sc0002216:457..2357- (Clytia hemisphaerica)
GTGACTTTGAACCATCAACCAAACAGCCAAAACAATCAACGGGCGAGATA
TTTGCGCAGCAGTACAACAATATAGGTAAGGATTGCCTCGTAAAGAAAAT
AGAAACAAAAAATTAAGTGGTCATTACTTCTAACATTACTGTTCTTGGAC
AAAATTACATAGGCGAGTTACAGATATTGATGTTTACAATTATATCGGTA
TTTGTATTAATCTAATTTAGAACTGCCAATGATGAGCGAATACAAAACAA
AGACTGGTAAAGAGCCGTTAAAAAGTCATCGCACATCCCGAAAAGTACCA
GAGAAAGCACCCATGAGTCAAGTGATGCAAGAAAATGTAGCTTCTGGACA
AGGTAAATATGTGGGTTGATATTTGAAATAATTTTCATTAAAAAAAATAA
ATCATTCATCCTAATGGAAATTTCTTGTGTTCAAAACATCGCTTTGTTTA
CCTTCAGGGCAATCAACCAATTGCAATCTCCAAACAGTTAGCGACAGTAA
CCTGGAAACGTCGACAAACCAAGAACAAGCCAATGGTGCAGCTATTGAAA
AGCAGTATAAAGATATAGGTAAATAGCCATTTGTATCGAAATTTCATTAA
AAGACTCAAATCACCGCTGCCAAAACTGAATATAGACCATAATAAAGGTT
GTGAACTTCTTTGCATAGTTTTATTTTTACACTATTAAACCTTTATTATA
TTTTATATTTTGTGAAGAACAACCGAAACCTGATCAATACAAGAAGCAGA
ATGGGAAAGAACCGTTAAAAAGCCACCGTAATACTCCGCACCAACGTCAA
CAGATAGAGCCGGAAACTACACCTCAGGATCAATTGATACAAGATCCCGA
CATCACATCTAATACTGGTAATTTTTTGTTTTATTCATATTTGTATCATA
AAAATGTTTCATCACAACTCAATGTCACTATAATTGTTTACAATTTTAAA
CTTTCTTTATAAACTAGAATTAAATTCAAAAATAGGTTTACAATGGAATC
TTTCGTTATCCAGCTGGCACACAGCGTTGTTTCAACATTTATATAACGTA
TAGAAGGTCCATATAACGATAGATGAACGTTGAAACAAGGTTGTGTGCCA
GGTGGATAGTTTGCATCGCTTAATTTTTGATAACTCGATATTTGGATAAT
TGAGAAAAAGGTTTACATTTTCGTTTTAATAGAAAGTGAAATCGACTCTG
CCACTGAAAAACGACTTTTGGAATCAACCGATCTATCAGAAACCGAAGGC
GAAGCAAGTTACAAGCAGATGGCAACGCCCAAACTAGCCGCAAGTCCTCT
ACGAAAGGAGGAAATCCTCAGATTTAAACTGGGGAAAACAAGATACAAAT
TTGAAGATCTAAACTCTTACGAGTACTGGCGGGAGGTTAGAAAAGTTTTG
GCCACAAACATGGGCAGAAGAGAAAGATTAACCGGACATTATTATCTCAA
TTTTGATGACCACTTTGAGCCAAAAGGGGGTGTGAAATGTCGCATCCCGA
AACCCGAGTTCGACGCATGGTGCTTGGTGAAGGGAAAGGTCCGAGAAGGA
TTTGACATAAAGGGATTTTGTTTGTGCTACCCCAATATTGAGGAAGAGTT
GAAACGTCTGAGAACGCTGATGACGATAATTGTAAACAGACCACCAATAA
ATAGTTAAAAAACATCTTTTGTTGTTTTTCTTTTCTAGTCGGTAGACAAT
GATGTTTGAACGTTCATATAACGGCAATTATTCTTTTTCACCGTTTTCAA
CGTTTAAACAATGTTGTGTACCAGCTGAGTCGTCTCTTATTTCCCAGTTC
TAAGATAAAGTAACTTTAGGATTTGATTGAAAAATAGAAAAAGGAGCCTT
TTTTAAGACATGCATCAATTTATCATCATAAAGTCATAATTTTAGAGGAA
A

Coding sequence (CDS) from alignment at sc0002216:457..2357-

>TCONS_00039840 ID=TCONS_00039840|Name=TCONS_00039840|organism=Clytia hemisphaerica|type=CDS|length=4710bp|location=Sequence derived from alignment at sc0002216:457..2357- (Clytia hemisphaerica)
AAAGTGAAATCGACTCTGCCACTGAAAAACGACTTTTGGAATCAACCGAT
CTATCAGAAACCGAAGGCGAAGCAAGTTACAAGCAGATGGCAACGCCCAA
ACTAGCCGCAAGTCCTCTACGAAAGGAGGAAATCCTCAGATTTAAACTGG
GGAAAACAAGATACAAATTTGAAGATCTAAACTCTTACGAGTACTGGCGG
GAGGTTAGAAAAGTTTTGGCCACAAACATGGGCAGAAGAGAAAGATTAAC
CGGACATTATTATCTCAATTTTGATGACCACTTTGAGCCAAAAGGGGGTG
TGAAATGTCGCATCCCGAAACCCGAGTTCGACGCATGGTGCTTGGTGAAG
GGAAAGGTCCGAGAAGGATTTGACATAAAGGGATTTTGTTTGTGCTACCC
CAATATTGAGGAAGAGTTGAAACGTCTGAGAACGCTGATGACGATAATTG
TAAACAGACCACCAATAAATAGTTAAAACAACCGAAACCTGATCAATACA
AGAAGCAGAATGGGAAAGAACCGTTAAAAAGCCACCGTAATACTCCGCAC
CAACGTCAACAGATAGAGCCGGAAACTACACCTCAGGATCAATTGATACA
AGATCCCGACATCACATCTAATACTGGGCAATCAACCAATTGCAATCTCC
AAACAGTTAGCGACAGTAACCTGGAAACGTCGACAAACCAAGAACAAGCC
AATGGTGCAGCTATTGAAAAGCAGTATAAAGATATAGAACTGCCAATGAT
GAGCGAATACAAAACAAAGACTGGTAAAGAGCCGTTAAAAAGTCATCGCA
CATCCCGAAAAGTACCAGAGAAAGCACCCATGAGTCAAGTGATGCAAGAA
AATGTAGCTTCTGGACAAGGACTTTGAACCATCAACCAAACAGCCAAAAC
AATCAACGGGCGAGATATTTGCGCAGCAGTACAACAATATAGAAAGTGAA
ATCGACTCTGCCACTGAAAAACGACTTTTGGAATCAACCGATCTATCAGA
AACCGAAGGCGAAGCAAGTTACAAGCAGATGGCAACGCCCAAACTAGCCG
CAAGTCCTCTACGAAAGGAGGAAATCCTCAGATTTAAACTGGGGAAAACA
AGATACAAATTTGAAGATCTAAACTCTTACGAGTACTGGCGGGAGGTTAG
AAAAGTTTTGGCCACAAACATGGGCAGAAGAGAAAGATTAACCGGACATT
ATTATCTCAATTTTGATGACCACTTTGAGCCAAAAGGGGGTGTGAAATGT
CGCATCCCGAAACCCGAGTTCGACGCATGGTGCTTGGTGAAGGGAAAGGT
CCGAGAAGGATTTGACATAAAGGGATTTTGTTTGTGCTACCCCAATATTG
AGGAAGAGTTGAAACGTCTGAGAACGCTGATGACGATAATTGTAAACAGA
CCACCAATAAATAGTTAAAACAACCGAAACCTGATCAATACAAGAAGCAG
AATGGGAAAGAACCGTTAAAAAGCCACCGTAATACTCCGCACCAACGTCA
ACAGATAGAGCCGGAAACTACACCTCAGGATCAATTGATACAAGATCCCG
ACATCACATCTAATACTGGGCAATCAACCAATTGCAATCTCCAAACAGTT
AGCGACAGTAACCTGGAAACGTCGACAAACCAAGAACAAGCCAATGGTGC
AGCTATTGAAAAGCAGTATAAAGATATAGAACTGCCAATGATGAGCGAAT
ACAAAACAAAGACTGGTAAAGAGCCGTTAAAAAGTCATCGCACATCCCGA
AAAGTACCAGAGAAAGCACCCATGAGTCAAGTGATGCAAGAAAATGTAGC
TTCTGGACAAGGACTTTGAACCATCAACCAAACAGCCAAAACAATCAACG
GGCGAGATATTTGCGCAGCAGTACAACAATATAGAAAGTGAAATCGACTC
TGCCACTGAAAAACGACTTTTGGAATCAACCGATCTATCAGAAACCGAAG
GCGAAGCAAGTTACAAGCAGATGGCAACGCCCAAACTAGCCGCAAGTCCT
CTACGAAAGGAGGAAATCCTCAGATTTAAACTGGGGAAAACAAGATACAA
ATTTGAAGATCTAAACTCTTACGAGTACTGGCGGGAGGTTAGAAAAGTTT
TGGCCACAAACATGGGCAGAAGAGAAAGATTAACCGGACATTATTATCTC
AATTTTGATGACCACTTTGAGCCAAAAGGGGGTGTGAAATGTCGCATCCC
GAAACCCGAGTTCGACGCATGGTGCTTGGTGAAGGGAAAGGTCCGAGAAG
GATTTGACATAAAGGGATTTTGTTTGTGCTACCCCAATATTGAGGAAGAG
TTGAAACGTCTGAGAACGCTGATGACGATAATTGTAAACAGACCACCAAT
AAATAGTTAAAACAACCGAAACCTGATCAATACAAGAAGCAGAATGGGAA
AGAACCGTTAAAAAGCCACCGTAATACTCCGCACCAACGTCAACAGATAG
AGCCGGAAACTACACCTCAGGATCAATTGATACAAGATCCCGACATCACA
TCTAATACTGGGCAATCAACCAATTGCAATCTCCAAACAGTTAGCGACAG
TAACCTGGAAACGTCGACAAACCAAGAACAAGCCAATGGTGCAGCTATTG
AAAAGCAGTATAAAGATATAGAACTGCCAATGATGAGCGAATACAAAACA
AAGACTGGTAAAGAGCCGTTAAAAAGTCATCGCACATCCCGAAAAGTACC
AGAGAAAGCACCCATGAGTCAAGTGATGCAAGAAAATGTAGCTTCTGGAC
AAGGACTTTGAACCATCAACCAAACAGCCAAAACAATCAACGGGCGAGAT
ATTTGCGCAGCAGTACAACAATATAGAAAGTGAAATCGACTCTGCCACTG
AAAAACGACTTTTGGAATCAACCGATCTATCAGAAACCGAAGGCGAAGCA
AGTTACAAGCAGATGGCAACGCCCAAACTAGCCGCAAGTCCTCTACGAAA
GGAGGAAATCCTCAGATTTAAACTGGGGAAAACAAGATACAAATTTGAAG
ATCTAAACTCTTACGAGTACTGGCGGGAGGTTAGAAAAGTTTTGGCCACA
AACATGGGCAGAAGAGAAAGATTAACCGGACATTATTATCTCAATTTTGA
TGACCACTTTGAGCCAAAAGGGGGTGTGAAATGTCGCATCCCGAAACCCG
AGTTCGACGCATGGTGCTTGGTGAAGGGAAAGGTCCGAGAAGGATTTGAC
ATAAAGGGATTTTGTTTGTGCTACCCCAATATTGAGGAAGAGTTGAAACG
TCTGAGAACGCTGATGACGATAATTGTAAACAGACCACCAATAAATAGTT
AAAACAACCGAAACCTGATCAATACAAGAAGCAGAATGGGAAAGAACCGT
TAAAAAGCCACCGTAATACTCCGCACCAACGTCAACAGATAGAGCCGGAA
ACTACACCTCAGGATCAATTGATACAAGATCCCGACATCACATCTAATAC
TGGGCAATCAACCAATTGCAATCTCCAAACAGTTAGCGACAGTAACCTGG
AAACGTCGACAAACCAAGAACAAGCCAATGGTGCAGCTATTGAAAAGCAG
TATAAAGATATAGAACTGCCAATGATGAGCGAATACAAAACAAAGACTGG
TAAAGAGCCGTTAAAAAGTCATCGCACATCCCGAAAAGTACCAGAGAAAG
CACCCATGAGTCAAGTGATGCAAGAAAATGTAGCTTCTGGACAAGGACTT
TGAACCATCAACCAAACAGCCAAAACAATCAACGGGCGAGATATTTGCGC
AGCAGTACAACAATATAGAAAGTGAAATCGACTCTGCCACTGAAAAACGA
CTTTTGGAATCAACCGATCTATCAGAAACCGAAGGCGAAGCAAGTTACAA
GCAGATGGCAACGCCCAAACTAGCCGCAAGTCCTCTACGAAAGGAGGAAA
TCCTCAGATTTAAACTGGGGAAAACAAGATACAAATTTGAAGATCTAAAC
TCTTACGAGTACTGGCGGGAGGTTAGAAAAGTTTTGGCCACAAACATGGG
CAGAAGAGAAAGATTAACCGGACATTATTATCTCAATTTTGATGACCACT
TTGAGCCAAAAGGGGGTGTGAAATGTCGCATCCCGAAACCCGAGTTCGAC
GCATGGTGCTTGGTGAAGGGAAAGGTCCGAGAAGGATTTGACATAAAGGG
ATTTTGTTTGTGCTACCCCAATATTGAGGAAGAGTTGAAACGTCTGAGAA
CGCTGATGACGATAATTGTAAACAGACCACCAATAAATAGTTAAAACAAC
CGAAACCTGATCAATACAAGAAGCAGAATGGGAAAGAACCGTTAAAAAGC
CACCGTAATACTCCGCACCAACGTCAACAGATAGAGCCGGAAACTACACC
TCAGGATCAATTGATACAAGATCCCGACATCACATCTAATACTGGGCAAT
CAACCAATTGCAATCTCCAAACAGTTAGCGACAGTAACCTGGAAACGTCG
ACAAACCAAGAACAAGCCAATGGTGCAGCTATTGAAAAGCAGTATAAAGA
TATAGAACTGCCAATGATGAGCGAATACAAAACAAAGACTGGTAAAGAGC
CGTTAAAAAGTCATCGCACATCCCGAAAAGTACCAGAGAAAGCACCCATG
AGTCAAGTGATGCAAGAAAATGTAGCTTCTGGACAAGGACTTTGAACCAT
CAACCAAACAGCCAAAACAATCAACGGGCGAGATATTTGCGCAGCAGTAC
AACAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024114XLOC_024114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039840-exon-sc0002216-1575043694:2283..2357TCONS_00039840-exon-sc0002216-1575043694:2283..2357Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1575043694:2006..2137TCONS_00039840-exon-sc0002216-1575043694:2006..2137Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1575043694:1790..1900TCONS_00039840-exon-sc0002216-1575043694:1790..1900Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1575043694:1491..1640TCONS_00039840-exon-sc0002216-1575043694:1491..1640Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1575043694:457..1175TCONS_00039840-exon-sc0002216-1575043694:457..1175Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1510915933:2283..2357TCONS_00039840-exon-sc0002216-1510915933:2283..2357Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1510915933:2006..2137TCONS_00039840-exon-sc0002216-1510915933:2006..2137Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1510915933:1790..1900TCONS_00039840-exon-sc0002216-1510915933:1790..1900Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1510915933:1491..1640TCONS_00039840-exon-sc0002216-1510915933:1491..1640Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1510915933:457..1175TCONS_00039840-exon-sc0002216-1510915933:457..1175Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1491911889:2283..2357TCONS_00039840-exon-sc0002216-1491911889:2283..2357Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1491911889:2006..2137TCONS_00039840-exon-sc0002216-1491911889:2006..2137Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1491911889:1790..1900TCONS_00039840-exon-sc0002216-1491911889:1790..1900Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1491911889:1491..1640TCONS_00039840-exon-sc0002216-1491911889:1491..1640Clytia hemisphaericaexon
TCONS_00039840-exon-sc0002216-1491911889:457..1175TCONS_00039840-exon-sc0002216-1491911889:457..1175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039840-proteinTCONS_00039840-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002216supercontigsc0002216:457..2357 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0362758	0.0353746	0	0	0.34244	0.2706	0.886127	0.829582	0.458534	0.492239	0.735045	0.241595	0.217133	0.05011	0.14419	0.221055	0.38125	0.251208	0.115686	0.0807047	0.385809	0.256614	0.0831863	0.0756284	0.35053	0.13904	0.0994827	0.212341	0.12079	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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