TCONS_00039835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039835
Unique NameTCONS_00039835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039835 ID=TCONS_00039835|Name=TCONS_00039835|organism=Clytia hemisphaerica|type=transcript|length=1630bp
GGAAATGTTGAAGAAAGAACAGAAGaattaaaaagcattgatgaaatttt
caaacaaattggAGAACAGTTATCTTCTCGTTTTGggGTAACCTTGAATC
TCAAAATACCTGACCTACAAAATGATACACAAGAGCCTACATCTGATGTC
GAAAGAAGTGAAAATGATATTTCTGACAAGGTAGAATATGACCAACAACA
AGAGaatGAAAAACCTAGGAGTAAACGCTTCAAGTGGAACGTTGAAGAAG
TGCCAATAGAAGAGCAGCAGAAAAAGAAGATCGAAAGGCTGCAACAAGTC
AATAGAGAGCAAACACACACTATCAACGTTTTACGAGAGAAGAACGCGTC
ACTTTGTCTAACAAGTGCGAGCTATACCCACCAAAAAATGGTTGATCAAC
TTGGGCAAACTCGTTCGGCATCGTTAGTAGATGCATCtttattttctaat
tctttCCATACTGGAGATTCCGTATTGCAGAAGCAAGAACCCGTATTTCT
CGgtgaaaatgaatttaaggGGTTAAGAACTACAAATTTGCCCTCCGGAT
CTTTTTCTGACGTCAAACGATATTTCTTTTCTGGTGATGATGATGAGACG
GTGGCTGTCAAATGCATGAGAACTGATATTTTTGGCTATCAAGTACTCGC
AGTTTTAAGCCATGAACACCGACTTTTGGCCTTTGCTGGTCGACATAAAA
ACATTGTTCGCACAATGGGTTTGGTACGCATCGGGGGAGCTTTGTCTCAT
GTTATGTACTATCAAGATGGGACAAGGCTTGATCTTATGATTCAAAAGTC
CACATTAAGaacgtttttcatttttaaagagTTGATCGAAGGAATTGCTT
GTGGACTCAACTTTCTTTTTTCGAAAGGAATTATACATAACAATTTAGTT
CcagaaaacattattttgaaaGATTGGGAGCCTGTTATTGTTGGATTTTC
ATTTGCCTGCCGTTCGGAAAGTGTTAAACCGaaagtttctaaatttttga
tgaGCAAATTCCCTGAGCAGAAACATTTTGCTCCTGAGATATTTACCGGC
TCGCCAGTCAGTTTTTCGACTGACGTATATGCATTTGGTGTTTTGGTTGA
AAGAATTCTGCGAGCCACGCGTGATTTCAAGTTGGATGACATACTCAAAT
CAAGAATTGATTGTTTTGCTACTGCTGGTTGTCAGTCAATTTTTGATTAT
AGGGAACGAGCAGATACTCTCTTGGAAAGAGTCAGGGCTATGTTTGCCTA
CTAGTTCCAGAACAAATAAACTGGATCCTaatattcctttttttatttca
ctctGATtttgtaccctgagtatcagaggccgagttttcaaagaaaatat
caacctctgacgacCAAGTGTAAAAATGTTattgcgcatgtgtcaatcta
gtCACTGTAAAAAGAATCAACGACGAAGAGCAAATATTGCCATGTTAATG
tttagcagactgtatcagtatacaTGTTCACTAttgacgaattccccaga
aacctccaagtgtaccaattgaaatgaatttctttcaaaagaaatctttt
acatgattcccaagtgtataacagtaattactaaactattaattatggta
atgtggaatcgaaataatagacatatCTTT
Run BLAST on NCBI

transcript from alignment at sc0002214:10348..13423-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039835 ID=TCONS_00039835|Name=TCONS_00039835|organism=Clytia hemisphaerica|type=transcript|length=3076bp|location=Sequence derived from alignment at sc0002214:10348..13423- (Clytia hemisphaerica)
GGAAATGTTGAAGAAAGAACAGAAGGTATTTATTACAAATAGTGATTGTA
TTCCTTTATGATATCGTCTGTTAGTAGTATACTTCGTAGTACAGACAGTT
CGAGAATTAGACGGAAATTAATCATCTAATTTTTGGACCTACCGGGAGGT
CCTTTAATTTGACCGTTGTCCGTTCGTCTCTTACAAGCTTTTCTCGGGAT
TGGCTCATTAGTTTTTTGTTTTTTTTTTCCTGATTTTTGGCAGAACGATA
GAGTGCAAGGCACCCTAAAATGTGGCTGAAGTAATTTTTCTCGGGAAATT
TTTTTTCGTCGTAAAATACGGATTTTTGCAAGTTTGGGCCAAAAACTATC
TAAAAATAAGTTTTTTTGGACTTGGTGCAAAATTGCTTCATTAGTTTTTT
CTGATTTTTTGGACAAAGATGAAGGGCAAGGTTCTCTAAAACGTGACTGA
AGTAGTTTTTTTACGGAAAATTTATTTTGGCCGTAAAAATCGGATTTTCT
TATTTGGGGAAATTCCCTTTTGTCATATTTAGGGAAAATGAGCATTTCTC
GAGATTGGCTTGGTATTTTAATCTTATTTTTTGTATAGTGGTAATTTGGG
TAGAAAAGTGCCTAATGTTTGTTTTTTTAGACTTTTTTGACTAATTTGAG
CTCTGATACTCACGGTAATCTATTCAAGCTGCTCACTACACTTTCTTATT
CCCTTGCTATTTGTCCTATTTTTTCTGATTTGGATCGACAGGTAGGTCCA
TTCAGCATGTTGCTTGTTTTTGTGGAAATTATACTGTTGCTAACACAATT
GTTTGCTTAGGAAAACACTACAGAAAGAGCTAAATGTAGTTTTGATTTTG
AGATTTCTTTTCTTGCTTTTCCAAATAATTCAGGAGAAAATAGGATCAAT
GGTGGAAGAATTAAAAAGCATTGATGAAATTTTCAAACAAATTGGAGAAC
AGTTATCTTCTCGTTTTGGGGTAAAAATTTATTTAAAAAAAGAGTTTATA
TCGTTTATTGGAAGGTCTGAGGATTCTTGAAAACTTTCAGAACATTGATA
TAGCAGTTTGAAATTTAATTATAAATTCATTACGATCCCCGTGTTTCATG
GGTTACCTTTCTCACTTGTAAAAACATTGTTCGTCAACAATTATTTAACT
AAGTGCAAATATTAATATGCGGAAATCTTTTTAGGTAACCTTGAATCTCA
AAATACCTGACCTACAAAATGATACACAAGAGGTGATATTTTAATTTTAA
TTCTAAGTTTTACGCTTTATTAGGGTTATCAATCATTCTGAACAAAGTTT
TATGCCTTATTGGGGTTATCAATCATTTTGAATCATTGGGTTATAAATCC
CAGTTTAAACGACTAAATAAACTTCATGAAATTATATATTTTTGATATTG
AATGGAATTTTTTCAGCCTACATCTGATGTCGAAAGAAGTGAAAATGATA
TTTCTGACAAGGTAGAATATGACCAACAACAAGAGGTAATTATGACTCAA
TCTTATTCCAGTTAGTGTAAGCGTCGTGTCAGAGCTTTGAAGTGCTATTT
GATATTTAAAGAGAGAGATAGGGTGTTGCTACAACTCACTAAAAGCTCAA
AGTTTCTTAATTAACATAATCCCTGACGAGTGTTCTGCTTTTTATTTTAG
AATGAAAAACCTAGGAGTAAACGCTTCAAGTGGAACGTTGAAGAAGTGCC
AATAGAAGAGCAGCAGAAAAAGAAGATCGAAAGGCTGCAACAAGTCAATA
GAGAGCAAACACACACTATCAACGTTTTACGAGAGAAGAACGCGTCACTT
TGTCTAACAAGTGCGAGCTATACCCACCAAAAAATGGTTGATCAACTTGG
GCAAACTCGTTCGGCATCGTTAGTAGATGCATCTTTATTTTCTAATTCTT
TCCATACTGGAGATTCCGTATTGCAGAAGCAAGAACCCGTATTTCTCGGT
GAAAATGAATTTAAGGGGTTAAGAACTACAAATTTGCCCTCCGGATCTTT
TTCTGACGTCAAACGATATTTCTTTTCTGGTGATGATGATGAGACGGTGG
CTGTCAAATGCATGAGAACTGATATTTTTGGCTATCAAGTACTCGCAGTT
TTAAGCCATGAACACCGACTTTTGGCCTTTGCTGGTCGACATAAAAACAT
TGTTCGCACAATGGGTTTGGTACGCATCGGGGGAGCTTTGTCTCATGTTA
TGTACTATCAAGATGGGACAAGGCTTGATCTTATGATTCAAAAGTCCACA
TTAAGAACGTTTTTCATTTTTAAAGAGTTGATCGAAGGAATTGCTTGTGG
ACTCAACTTTCTTTTTTCGAAAGGAATTATACATAACAATTTAGTTCCAG
AAAACATTATTTTGAAAGATTGGGAGCCTGTTATTGTTGGATTTTCATTT
GCCTGCCGTTCGGAAAGTGTTAAACCGAAAGTTTCTAAATTTTTGATGAG
CAAATTCCCTGAGCAGAAACATTTTGCTCCTGAGATATTTACCGGCTCGC
CAGTCAGTTTTTCGACTGACGTATATGCATTTGGTGTTTTGGTTGAAAGA
ATTCTGCGAGCCACGCGTGATTTCAAGTTGGATGACATACTCAAATCAAG
AATTGATTGTTTTGCTACTGCTGGTTGTCAGTCAATTTTTGATTATAGGG
AACGAGCAGATACTCTCTTGGAAAGAGTCAGGGCTATGTTTGCCTACTAG
TTCCAGAACAAATAAACTGGATCCTAATATTCCTTTTTTTATTTCACTCT
GATTTTGTACCCTGAGTATCAGAGGCCGAGTTTTCAAAGAAAATATCAAC
CTCTGACGACCAAGTGTAAAAATGTTATTGCGCATGTGTCAATCTAGTCA
CTGTAAAAAGAATCAACGACGAAGAGCAAATATTGCCATGTTAATGTTTA
GCAGACTGTATCAGTATACATGTTCACTATTGACGAATTCCCCAGAAACC
TCCAAGTGTACCAATTGAAATGAATTTCTTTCAAAAGAAATCTTTTACAT
GATTCCCAAGTGTATAACAGTAATTACTAAACTATTAATTATGGTAATGT
GGAATCGAAATAATAGACATATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024110XLOC_024110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039835-exon-sc0002214-1575043694:13399..13423TCONS_00039835-exon-sc0002214-1575043694:13399..13423Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1575043694:12454..12515TCONS_00039835-exon-sc0002214-1575043694:12454..12515Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1575043694:12192..12239TCONS_00039835-exon-sc0002214-1575043694:12192..12239Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1575043694:11939..12007TCONS_00039835-exon-sc0002214-1575043694:11939..12007Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1575043694:10348..11773TCONS_00039835-exon-sc0002214-1575043694:10348..11773Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1510915933:13399..13423TCONS_00039835-exon-sc0002214-1510915933:13399..13423Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1510915933:12454..12515TCONS_00039835-exon-sc0002214-1510915933:12454..12515Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1510915933:12192..12239TCONS_00039835-exon-sc0002214-1510915933:12192..12239Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1510915933:11939..12007TCONS_00039835-exon-sc0002214-1510915933:11939..12007Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1510915933:10348..11773TCONS_00039835-exon-sc0002214-1510915933:10348..11773Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1491911889:13399..13423TCONS_00039835-exon-sc0002214-1491911889:13399..13423Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1491911889:12454..12515TCONS_00039835-exon-sc0002214-1491911889:12454..12515Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1491911889:12192..12239TCONS_00039835-exon-sc0002214-1491911889:12192..12239Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1491911889:11939..12007TCONS_00039835-exon-sc0002214-1491911889:11939..12007Clytia hemisphaericaexon
TCONS_00039835-exon-sc0002214-1491911889:10348..11773TCONS_00039835-exon-sc0002214-1491911889:10348..11773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002214supercontigsc0002214:10348..13423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224701	0.407255	0.282686	0.221969	0.916987	0	0.325462	1.49154	1.14449	1.24804	2.76786	1.69995	3.03132	3.04228	0	0.354372	1.73227	0.963824	0.610425	0	0.310182	1.73082	0.36391	0.382899	1.54979	2.96028	0.0928579	0.328823	0.443378	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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