TCONS_00039834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039834
Unique NameTCONS_00039834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039834 ID=TCONS_00039834|Name=TCONS_00039834|organism=Clytia hemisphaerica|type=transcript|length=489bp
ataaaataaaatgtcgAAACGGATAAGGTCAACAATGTCCAAAACACTGG
AGCAAAAGAGCATTCTTCAGAAATATTATGATCAGGGAATGACTTCTTAT
GGTAAGGATCATTACGAAGCAAAGCAAATGGTTTTAAAAGCAGTTGAAGA
GACTGGTCTCTCTGAAAAACAAGTAAAGGTATAAATAAATCTCATTCGTA
ATTTTACAGTACGTCTTACTTTCAAGAGTAATGGGACTGGATTAGCAACC
GATTAGGTGTGTCACTTGGTCATCAAGTTTTTATATACACTTATTACTTC
CAATGTTTAGTTATCGGTTTCTAGATAATATTTATAACTTCATTTGTACA
AGCTAGTGAAGAAAATCAAGTGTaatattctcataaaaattcaatttctc
aaAAGGATTGgataaataatcaaaataaaccCCCCAAAGTCTCGAAGACA
GAGAAGATCTACACCAAAAAACCGAGGGGATGCGATTTG
Run BLAST on NCBI

transcript from alignment at sc0002214:8969..9457-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039834 ID=TCONS_00039834|Name=TCONS_00039834|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at sc0002214:8969..9457- (Clytia hemisphaerica)
ATAAAATAAAATGTCGAAACGGATAAGGTCAACAATGTCCAAAACACTGG
AGCAAAAGAGCATTCTTCAGAAATATTATGATCAGGGAATGACTTCTTAT
GGTAAGGATCATTACGAAGCAAAGCAAATGGTTTTAAAAGCAGTTGAAGA
GACTGGTCTCTCTGAAAAACAAGTAAAGGTATAAATAAATCTCATTCGTA
ATTTTACAGTACGTCTTACTTTCAAGAGTAATGGGACTGGATTAGCAACC
GATTAGGTGTGTCACTTGGTCATCAAGTTTTTATATACACTTATTACTTC
CAATGTTTAGTTATCGGTTTCTAGATAATATTTATAACTTCATTTGTACA
AGCTAGTGAAGAAAATCAAGTGTAATATTCTCATAAAAATTCAATTTCTC
AAAAGGATTGGATAAATAATCAAAATAAACCCCCCAAAGTCTCGAAGACA
GAGAAGATCTACACCAAAAAACCGAGGGGATGCGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024109XLOC_024109Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039834-exon-sc0002214-1575043694:8969..9457TCONS_00039834-exon-sc0002214-1575043694:8969..9457Clytia hemisphaericaexon
TCONS_00039834-exon-sc0002214-1510915933:8969..9457TCONS_00039834-exon-sc0002214-1510915933:8969..9457Clytia hemisphaericaexon
TCONS_00039834-exon-sc0002214-1491911889:8969..9457TCONS_00039834-exon-sc0002214-1491911889:8969..9457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002214supercontigsc0002214:8969..9457 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.247117	0	0	0.176083	0.155765	0.200499	0	0	0.378375	0.33666	0.396713	0.168537	0.118892	0	0.220897	0	0.284277	0.134692	0	0.704723	0.196656	0.658945	0.13208	0.408117	0.364234	0	0.185419	0.140634	0.573135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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