TCONS_00039833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039833
Unique NameTCONS_00039833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039833 ID=TCONS_00039833|Name=TCONS_00039833|organism=Clytia hemisphaerica|type=transcript|length=508bp
gCATCATAGAAGCATTGATTGTACGTATATTTAGAGCGAACGAAACTACT
TTTGagtatgaaaaaatttaaacttaTAATAGcttttaataaattttatt
aatttcaatGTTCATTGTTCTATTTTAGTAGGTAttagtaaaataaaata
aaatgtcgAAACGGATAAGGTCAACAATGTCCAAAACACTGGAGCAAAAG
AGCATTCTTCAGAAATATTATGATCAGGGAATGACTTCTTATGGTAAGGA
TCATTACGAAGCAAAGCAAATGGTTTTAAAAGCAGTTGAAGAGACTGGTC
TCTCTGAAAAACAAGTAAAGGATTGgataaataatcaaaataaaccCCCC
AAAGTCTCGAAGACAGAGAAGATCTACACCAAAAAACCGAGGGGATGCGA
TTTGTTCAAAAGAAAGTACTTCGAAAACTTAAAAGGTTTGCTTCGGATAT
TAATTTATTTGATGCACAAGAGTTCACGTATCGCTGAGTGTCTATGAGTG
GATGTTGC
Run BLAST on NCBI

protein sequence of TCONS_00039833-protein

>TCONS_00039833-protein ID=TCONS_00039833-protein|Name=TCONS_00039833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MSKRIRSTMSKTLEQKSILQKYYDQGMTSYGKDHYEAKQMVLKAVEETGL
SEKQVKDWINNQNKPPKVSKTEKIYTKKPRGCDLFKRKYFENLKGLLRIL
IYLMHKSSRIAECL
Run BLAST on NCBI

transcript from alignment at sc0002214:8865..9599-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039833 ID=TCONS_00039833|Name=TCONS_00039833|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0002214:8865..9599- (Clytia hemisphaerica)
GCATCATAGAAGCATTGATTGTACGTATATTTAGAGCGAACGAAACTACT
TTTGAGTATGAAAAAATTTAAACTTATAATAGCTTTTAATAAATTTTATT
AATTTCAATGTTCATTGTTCTATTTTAGTAGGTATTAGTAAAATAAAATA
AAATGTCGAAACGGATAAGGTCAACAATGTCCAAAACACTGGAGCAAAAG
AGCATTCTTCAGAAATATTATGATCAGGGAATGACTTCTTATGGTAAGGA
TCATTACGAAGCAAAGCAAATGGTTTTAAAAGCAGTTGAAGAGACTGGTC
TCTCTGAAAAACAAGTAAAGGTATAAATAAATCTCATTCGTAATTTTACA
GTACGTCTTACTTTCAAGAGTAATGGGACTGGATTAGCAACCGATTAGGT
GTGTCACTTGGTCATCAAGTTTTTATATACACTTATTACTTCCAATGTTT
AGTTATCGGTTTCTAGATAATATTTATAACTTCATTTGTACAAGCTAGTG
AAGAAAATCAAGTGTAATATTCTCATAAAAATTCAATTTCTCAAAAGGAT
TGGATAAATAATCAAAATAAACCCCCCAAAGTCTCGAAGACAGAGAAGAT
CTACACCAAAAAACCGAGGGGATGCGATTTGTTCAAAAGAAAGTACTTCG
AAAACTTAAAAGGTTTGCTTCGGATATTAATTTATTTGATGCACAAGAGT
TCACGTATCGCTGAGTGTCTATGAGTGGATGTTGC

Coding sequence (CDS) from alignment at sc0002214:8865..9599-

>TCONS_00039833 ID=TCONS_00039833|Name=TCONS_00039833|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0002214:8865..9599- (Clytia hemisphaerica)
GATTGGATAAATAATCAAAATAAACCCCCCAAAGTCTCGAAGACAGAGAA
GATCTACACCAAAAAACCGAGGGGATGCGATTTGTTCAAAAGAAAGTACT
TCGAAAACTTAAAAGGTTTGCTTCGGATATTAATTTATTTGATGCACAAG
AGTTCACGTATCGCTGAGTGTCTATGAATGTCGAAACGGATAAGGTCAAC
AATGTCCAAAACACTGGAGCAAAAGAGCATTCTTCAGAAATATTATGATC
AGGGAATGACTTCTTATGGTAAGGATCATTACGAAGCAAAGCAAATGGTT
TTAAAAGCAGTTGAAGAGACTGGTCTCTCTGAAAAACAAGTAAAGGATTG
GATAAATAATCAAAATAAACCCCCCAAAGTCTCGAAGACAGAGAAGATCT
ACACCAAAAAACCGAGGGGATGCGATTTGTTCAAAAGAAAGTACTTCGAA
AACTTAAAAGGTTTGCTTCGGATATTAATTTATTTGATGCACAAGAGTTC
ACGTATCGCTGAGTGTCTATGAATGTCGAAACGGATAAGGTCAACAATGT
CCAAAACACTGGAGCAAAAGAGCATTCTTCAGAAATATTATGATCAGGGA
ATGACTTCTTATGGTAAGGATCATTACGAAGCAAAGCAAATGGTTTTAAA
AGCAGTTGAAGAGACTGGTCTCTCTGAAAAACAAGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024109XLOC_024109Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039833-proteinTCONS_00039833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039833-exon-sc0002214-1575043694:9280..9599TCONS_00039833-exon-sc0002214-1575043694:9280..9599Clytia hemisphaericaexon
TCONS_00039833-exon-sc0002214-1575043694:8865..9052TCONS_00039833-exon-sc0002214-1575043694:8865..9052Clytia hemisphaericaexon
TCONS_00039833-exon-sc0002214-1510915933:9280..9599TCONS_00039833-exon-sc0002214-1510915933:9280..9599Clytia hemisphaericaexon
TCONS_00039833-exon-sc0002214-1510915933:8865..9052TCONS_00039833-exon-sc0002214-1510915933:8865..9052Clytia hemisphaericaexon
TCONS_00039833-exon-sc0002214-1491911889:9280..9599TCONS_00039833-exon-sc0002214-1491911889:9280..9599Clytia hemisphaericaexon
TCONS_00039833-exon-sc0002214-1491911889:8865..9052TCONS_00039833-exon-sc0002214-1491911889:8865..9052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002214supercontigsc0002214:8865..9599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355964	0	0	0.262875	5.59555	3.90034	2.40558	2.28504	1.79978	1.37959	0.285799	0.734823	0	0.544283	1.07802	0.805408	2.22684	2.19882	0	0.263977	0.831446	1.83031	0.199211	0.494746	0.127394	0.227393	0.650796	0.173637	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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