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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039829 ID=TCONS_00039829|Name=TCONS_00039829|organism=Clytia hemisphaerica|type=transcript|length=679bp
AGGAACTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAAGCCAAAGCC
CTTTTGTCCAACAAGCAGTAACTTCTTCTCAAAGTACCACAAACAGAAGT
AACCCAGGCCAAAGCCCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCA
AAGTACCACAAACAGAAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGC
TGGATTTACCATCGATGATGGAATTCAGACGACAATTTCCTGGTCTGTCA
AAAccaaaatcaggaaaagaaatgcaaaaaaagtttttaccaaAAAGATC
AAAACCTTATGAGAGATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTT
GGTCGCACAACTTTGTCTGTTTGGCAGGCACTAATTCACCAACTACTCCA
AATGCAGAAGACCTGACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAG
GGTCGTTTTCACTGACAAGAATGGTGATCATGAGCATGTGAGATATATCC
TTGAAGAGCATTATCCAAAccTGAAATCTCAAGATGGAGCATTTATGTTA
TCAAAAGCAGTTGTTGGGGGAGTGGGTGAGCGGCCGCTTACACCGCTTTT
AGCAttgggcaggtctaaaacgcctaatacctactacttaatacttacta
cgtAATACTTAATACTGACTACCTAATCC Run BLAST on NCBI protein sequence of TCONS_00039829-protein >TCONS_00039829-protein ID=TCONS_00039829-protein|Name=TCONS_00039829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
GTSSQSTTNRSNPSQSPFVQQAVTSSQSTTNRSNPGQSPFVRQAVTSSSQ
STTNRSNPGQSPFVRQLDLPSMMEFRRQFPGLSKPKSGKEMQKKFLPKRS
KPYERFVPKKAKPASPWSHNFVCLAGTNSPTTPNAEDLTELNLAGLGKKR
VVFTDKNGDHEHVRYILEEHYPNLKSQDGAFMLSKAVVGGVGERPLTPLL
ALGRSKTPNTYYLILTT Run BLAST on NCBI transcript from alignment at sc0002212:25149..26328- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039829 ID=TCONS_00039829|Name=TCONS_00039829|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0002212:25149..26328- (Clytia hemisphaerica)
AGGAACTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAAGCCAAAGCC
CTTTTGTCCAACAAGCAGTAACTTCTTCTCAAAGTACCACAAACAGAAGT
AACCCAGGCCAAAGCCCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCA
AAGTACCACAAACAGAAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGC
TGGATTTACCATCGATGATGGAATTCAGACGACAATTTCCTGGTCTGTCA
AAACCAAAATCAGGAAAAGAAATGCAAAAAAAGTTTTTACCAAAAAGATC
AAAACCTTATGAGAGATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTT
GGTCGCACAACTTTGTCTGTTTGGCAGGCACTAATTCACCAACTACTCCA
AATGCAGAAGACCTGACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAG
GGTCGTTTTCACTGACAAGAATGGTGATCATGAGCATGTGAGATATATCC
TTGAAGAGCATTATCCAAAGTTAGTGTTGTTCAATTTTTAAATAAGATAA
ATCAAAGATGCTAAAGTCTATTTCAAATTAGTTCATCACTGATTGAATCT
AAAAAAAACACCAAAAAACAGCCTTTTTTACAGTCAACTAGCTGAAGACT
TCATGCAATATCTTTTGACCGAACAAATATTTTTGAAAGGTTTTTTCACA
GTAATGATGCTCTAAGATTCTAGAATCATCCCTGTAAAATTGTCATTATA
GCACAATTCTACCAGGAGTTGATTTTTTTCCTTTTTCATTGTTCATCTTC
ATTTTTAAAACTTTTTTCGAATCTATCACAATTATCTTTTCAACAAGCAT
AGAATTGCTATCTAGTTTAAAGTATATCAAAAGTTATGAGCATTTCAAAT
TTTACTGACAGCTAATTTGAAATGAACTTCGAAATGCACTAGACTCTTTT
GTGTGATTACTTTCTCACTGTTCCTTGTTAAACCAACAAGTCTAGCGTGA
GAAAATCTTTTTCTTTTCAGCCTGAAATCTCAAGATGGAGCATTTATGTT
ATCAAAAGCAGTTGTTGGGGGAGTGGGTGAGCGGCCGCTTACACCGCTTT
TAGCATTGGGCAGGTCTAAAACGCCTAATACCTACTACTTAATACTTACT
ACGTAATACTTAATACTGACTACCTAATCC Coding sequence (CDS) from alignment at sc0002212:25149..26328- >TCONS_00039829 ID=TCONS_00039829|Name=TCONS_00039829|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0002212:25149..26328- (Clytia hemisphaerica)
CCTGAAATCTCAAGATGGAGCATTTATGTTATCAAAAGCAGTTGTTGGGG
GAGTGGGTGAGCGGCCGCTTACACCGCTTTTAGCATTGGGCAGGTCTAAA
ACGCCTAATACCTACTACTTAATACTTACTACGTAAGGAACTTCTTCTCA
AAGTACCACAAACAGAAGTAACCCAAGCCAAAGCCCTTTTGTCCAACAAG
CAGTAACTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAGGCCAAAGC
CCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCAAAGTACCACAAACAG
AAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGCTGGATTTACCATCGA
TGATGGAATTCAGACGACAATTTCCTGGTCTGTCAAAACCAAAATCAGGA
AAAGAAATGCAAAAAAAGTTTTTACCAAAAAGATCAAAACCTTATGAGAG
ATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTTGGTCGCACAACTTTG
TCTGTTTGGCAGGCACTAATTCACCAACTACTCCAAATGCAGAAGACCTG
ACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAGGGTCGTTTTCACTGA
CAAGAATGGTGATCATGAGCATGTGAGATATATCCTTGAAGAGCATTATC
CAAACCTGAAATCTCAAGATGGAGCATTTATGTTATCAAAAGCAGTTGTT
GGGGGAGTGGGTGAGCGGCCGCTTACACCGCTTTTAGCATTGGGCAGGTC
TAAAACGCCTAATACCTACTACTTAATACTTACTACGTAAGGAACTTCTT
CTCAAAGTACCACAAACAGAAGTAACCCAAGCCAAAGCCCTTTTGTCCAA
CAAGCAGTAACTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAGGCCA
AAGCCCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCAAAGTACCACAA
ACAGAAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGCTGGATTTACCA
TCGATGATGGAATTCAGACGACAATTTCCTGGTCTGTCAAAACCAAAATC
AGGAAAAGAAATGCAAAAAAAGTTTTTACCAAAAAGATCAAAACCTTATG
AGAGATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTTGGTCGCACAAC
TTTGTCTGTTTGGCAGGCACTAATTCACCAACTACTCCAAATGCAGAAGA
CCTGACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAGGGTCGTTTTCA
CTGACAAGAATGGTGATCATGAGCATGTGAGATATATCCTTGAAGAGCAT
TATCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039829-exon-sc0002212-1575043694:25810..26328 | TCONS_00039829-exon-sc0002212-1575043694:25810..26328 | Clytia hemisphaerica | exon |
| TCONS_00039829-exon-sc0002212-1575043694:25149..25308 | TCONS_00039829-exon-sc0002212-1575043694:25149..25308 | Clytia hemisphaerica | exon |
| TCONS_00039829-exon-sc0002212-1510915933:25810..26328 | TCONS_00039829-exon-sc0002212-1510915933:25810..26328 | Clytia hemisphaerica | exon |
| TCONS_00039829-exon-sc0002212-1510915933:25149..25308 | TCONS_00039829-exon-sc0002212-1510915933:25149..25308 | Clytia hemisphaerica | exon |
| TCONS_00039829-exon-sc0002212-1491911889:25810..26328 | TCONS_00039829-exon-sc0002212-1491911889:25810..26328 | Clytia hemisphaerica | exon |
| TCONS_00039829-exon-sc0002212-1491911889:25149..25308 | TCONS_00039829-exon-sc0002212-1491911889:25149..25308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002212 | supercontig | sc0002212:25149..26328 - |
Blast
The following BLAST results are available for this feature:
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