TCONS_00039828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039828
Unique NameTCONS_00039828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039828 ID=TCONS_00039828|Name=TCONS_00039828|organism=Clytia hemisphaerica|type=transcript|length=1084bp
TTAGCATTATCATCCGGCTACACTGTTTTGCAGATTAAGGAGGAGGCAAA
AACATCGCTTGTCTATGTAATTCCATTGAATTCTGATCTTGACAAAACCC
CACTAGAtgtcaataattttcaaaaccatGATGTGCAATTAGTCAAATGC
CACACCTGTCAAAAAGAAGTTCCacttatttcttttcaaaaccacAAAAG
CAACTGCAAAACAACTGaatttgaagaaaacaaagaagaatCCGTTGCTG
ACACAAtccaaaaattacaaattttattCCCCCAACATGATAAGGAATAT
TTAAACACAGTATTTTCTGGGTCCATACATATCAATGAAGCTGTTGAGAA
AATATTAAAGGAAATGAACAATTTGGAACACGGTAACAAAAACCTTCTCG
AGGAAACAGATATTCCTGGAGGTTCTGGTAATAATGATCTCGTTGAAAGT
GATAGCAGCAACAGTGACCATGACAGCCTACCAGATAGTGGTGTTGGTAA
GAAAATAAAAGACCAAAAGTTGAAGTGGGAATCATTCAAAAGGAGGAACT
TGAAAAAAGGGCATGTTCTCGTTAAAATAAACCGTGATACAATTCTTTTA
TCGACAATGACTTTGTTCAAGCGTGGAGATATCAAAAACATTTCTATTCC
ACCAGAagttaaatttcaaaatgaagatGGCATCGACGCTACCGGCCCGA
GAAAGGAGTACTTTTTTCATACGATTAAATCTTTTCTCAGCGGAGAAAAA
AACATTGTGTTGTTTGAAGGCCGTGAAGACCGTAAAGTTCCAGTACATGA
CACTGATCTGTTGGCTTCAGATTTCTTTTATTATGCTGGGAAATTTGTGG
CAATGGCTTTCTTCCATGGGGAAATTGGAATATGGAGTATTTCGCCTTGC
ATTCAAGAATACATCTTGTCTGGATCCAAAACAGCAGCAATTGCACTTGT
AGAAGCGAAAGATGTGGCTGACTTGGAAACCCAATCTATTTTGGAAAGTG
CCTGGATCGATTGATGGATTTTGCCAACAAGCCGAACAAGCTAGAGCAAA
AAGCTGTCAATATACACTGGGCCAATTAATCgcg
Run BLAST on NCBI

transcript from alignment at sc0002212:14589..20582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039828 ID=TCONS_00039828|Name=TCONS_00039828|organism=Clytia hemisphaerica|type=transcript|length=5994bp|location=Sequence derived from alignment at sc0002212:14589..20582- (Clytia hemisphaerica)
TTAGCATTATCATCCGGCTACACTGTTTTGCAGATTAAGGAGGAGGCAAA
AACATCGCTTGTCTATGTAATTCCATTGAATTCTGATCTTGACAAAACCC
CACTAGATGTCAATAATTTTCAAAACCATGATGTGCAATTAGTCAAATGC
CACACCTGTCAAAAAGAAGTTCCACTTATTTCTTTTCAAAACCACAAAAG
CAACTGCAAAACAACTGGTACAATTTTATTCTATATATTATTTACCAACT
AAAAGTATTATTTTCTTTCACTTGCCTTCTATATCTGTTGCTCTTGCCTT
AATTCTTTTTATGGTAGAGTTTAAAAACATGGGTAATAGGTCCTAATTCT
CACAAGACCAGACTTACTACAGTATAGTAGTGAAACAAAAAGATCTCTTT
ACCAACACTATAAATAGATGGGTTTTACAGGGAACATGTTAGCAGAACTT
TTTGTATTTGTTGTCTAGATAAATCATTCTCTCAAAAAAGGCTGTGATGT
GATATACTTTTTGACCTTGGTTTTAGAATTTGAAGAAAACAAAGAAGAAT
CCGTTGCTGACACAATCCAAAAATTACAAATTTTATTCCCCCAACATGAT
AAGGAATATTTAAACACAGTATTTTCTGGGTCCATACATATCAATGAAGC
TGTTGAGAAAATATTAAAGGAAATGAACAATTTGGTGAGTTATTTTTTAA
AAGGGTTGTAATGTAATCATTAAATCGATTTGATTGGGCCCCATAGTGTC
CTCCTGGGTCAGCTCCCCCCAGGAAATGTGAAACGTTCGCTATTTAAGCA
GGGGAGGGGTCTGCGTCCATACTCTCAGTTCTTTAATAGACGGATGTAAT
TTGAGTATTGATATCAGATATGGGACTGACCAGGGTTACAAATTAGTGGG
CAAAAAATTTCAGATTTTGAGAACATCATCAGAATATTTTGAGCCAGAAA
ATTTTGAAAAATCAAGCACAATTGAGCTTAAGCCAAAATAAACTGGTTCC
TATTTTAAAAAGTGTGTATATTTGAAAAAGCTAATCAAGATTAAGAATTT
TACAAAAGTTACGGCCAAGGGCAGAATAGGCCGGAAATTTTCTTCGTTTG
ATATATAACAGTCGATAGTGCGTGACGCGCTGGTCTCAACTTCAATATAT
TATCTACCGGGTGACCCACGAAAAAAAAAAACCAGGGTTTCAGTGAAAAG
TACCCTTGATATGATATTAATATTATCAAAAATTACTTTTTCATCGTAAA
TAGATACATTAACTTAAATTTTGAGCTGTCAATTTTTTCTGACAAGTAGT
TCTCCAGATATAGAGGTTTGAAAGTCACTTAAAAAATTATCAAAAAACGT
AATAAAAACAGGGCTTCAAATTTGACCATTTTTAACAAAGAAAATAAACA
TTTTATGACAATGACTTTTGTTGCCGAATTAGTAATTTTATTGGTTCTTT
TTTATAAACAATTTTCAAAAAAGGTTTATAGGGTGAAAAACCAAAGAACA
ATTTTAGAAAAAAATTCAGCAATTTTAGAAAAAAAAATTACAAAGAAAGA
GTTACAAAATGCTTAATTAGATACCCAGTTTTTGACGTTTTTTGATGATT
TTTTAAAGTGATTTTTAACTTCAAACCTCCATATCTCGAAAACTCCTTGT
CAAAAGTAAAGAGGTGGTGGCTCAAAATATAAGTTTGAGTATCCTCTTTG
GGATGAAAAATTTTTCAACAAAATAATATCATATCGAGCGTACTTTGCAC
CGAAACCCTGGTACTTTTTCGTGGATCACCCGGTAGATAATTTGTAGACC
CAATTGTAAAATTTATAAGCTAATCTTAATGAAATTTTCAGCCAAATCAG
ACCATTTTTATGTCTCCAGGCTGACCCCAAAGTTTTTTGCAACACTTTGG
TGAAAGCTCGTCCTCAGGCCCAAAAATCAAATGTTTAGAAATAAAATGAA
GAAATTACCACCAAGTATTCACCCAAGGAATAAGTGTGCCAAATTTCAGC
CAAATCTGACCATTTTTAAAGTCTCCACACGAAAGTTAAAATTTGGCTTT
ATTATTTATTATGATCAATGTAATCTTGAATGAATTTCTGATCAGATGCC
AAATTTTCAGGTCTCTATCTGATCTGGAAGTCAAGTTATGGGGCTCCAAA
GTTGATTGAAAACCAGATTTTGATGAAAAATCAAAATAAGTTAAAAATTA
CTCTAGGGGCTGAGTTAGGTCCCGTATGCGCATCGGCGTATAGTCATTTT
TTCTTTTGATCATANTCCTTGAAGAGTCAGAAAACGTGTGTGGCGTTATT
TGGATCAGGCACAAATTTCCATAATGGCGGATTTTAGATTTTCAACCCTT
TTTAGCCGTCTTGCTTGAAAAAAATATTTTTTTGACTTTAAACATAGACA
TATTATATACCAATCGATCACAAATTTTATGCTGATTAAGAAAAAGATCA
GAATCATGGTCTGAAAATTTCGTTATCTGGAAATATGAAGCACTTTCGAT
TTCGATTTTTTGAACTGACTACTTTTGGTTCCAGATTTGCGTGGCTGTAA
CATTTGATTGGCTTATTTAATTTACTTGAAATTTTCGGAGGGTCTTGCCT
ATCGTTCAAATAATAAAATTCAGGAAAAATTTTTTTTCTACATGAATTTC
GAAATCCATAATGGCGGATTCAAAATTTCATGCTGAAAATTTCGTTATCA
AGAGATAGGAAGTACTTACGTTTTCTAAGTTTTGAAAACGAAAGTACTTC
ATAGCTCGAGATAGCAAAATTTCAGACCACGGTTCTGACCTTTTTCTTAA
TCAGCATAAAATTTCTGATCGATTGGTATATAATATGTAGGGTTTTAAGC
TCAAAAAATATTTTTCTTAGTCTAGCAGAGCCTAAGAGCCCATGTGACGC
TGTTTTGATCTGTTGGTTCAACTTTTGTCCTTGTTGCGTTAAGTTGGTGA
AAATGATTTCTCGCTCTGTTTGAATGTTTTTGATTTTTAGTTTGACACGC
GTTTTCTGAATTTTAATTAGCTTTTTCAGATAAAAAGGGTTGAAAATCTA
AAATCCGCCATTATGGAAATTTGTGCCTGGTCCAAATAACGCCACACACG
TTTTCTGACTCTTCAAGGACTATACTTTCATGATCAAAAGAAAAAATGAC
TATACGCCGATGTGCATACGAGACCTAACTCAGCCCCTAGAGTAAATGGA
TATTTTTGAACATTCTGATCTAAATTCAGGGTTAAAACCAGTTTTTTTGT
GTGTTAACCTTAGAGACATTATATTCTTAAGAGAAATTACTCAAAAGTAT
GTATAAATGTTTAAAAACAAGAAAAAACTCAAATTTTCCATCAAAATTCT
CATCACGAATTTGTTTAAATTAGCCACAAATGTCAAAATATCTCAAAAAC
TGCTAATTGTCACATATCAAACCATATGAAAACTACAGACACTAACCATT
CTAGAAATGCTGGAATTTTGGTGTGACGCTTAGCGGTTTAGAAGTTCAAA
TTTTAAAAATTGAAGTCTACAATATGTCTAACTCATGTAATGTGACCCTA
CAGCTTTTTGAAAGCCTTTACAATACAAAAAGTGTAAGAAGTGTCTTGTT
CCTCTCCTTCTCCTTTTTCCAAAGTTTTTCCATTTGGGCCCAGTGTGCAC
CAGGCTCTCCTAAAGTATTTGGGACAAATACAGACAGACATACAGACATT
TCCAGATTCCTAGCTCAACTTCTGTACATTTCGGATTTTAAGAAAATCCC
TCATGGTGTTCTAGTTGAGATTTTGGTACTGACTCTGGAAGTCAGTTTAT
AATTTTGTGTTTTTCTTCTCTACAGGAACACGGTAACAAAAACCTTCTCG
AGGAAACAGATATTCCTGGAGGTAATAATATATTTTTTATATTTCAGATG
GGCCCAAAATAACAAAACTTAAAATTTTATATGTGGTCAAGAAAACCTAA
AATAATGATATTCCCAAAATTTTCATCTCAGAATAATGAAAGTCTTGTAA
TTAATTAAAATTTTTGTTCCTATCAATTTAAGTAAAAAACTCTCTGCCCT
CTAAAAGAGGTCAACTCTTCTAGGTGGGTTCCAATCTCAGGAATCTATTA
TATAACTAAATTACATCAAGTAAGATCGTTTAAAATTTAAAATGGTTTTT
AAAGTGCGCAAATTCAAATAAAAAAGATGCAATTCTTTAACCCTATTAGC
CCCAAGCTTTTTTTGCTTCTGTAGCTCCAAGGGGAGGGTAGAATCTACCA
CGCTCAATATTTTTTGATTCAGAAGTGCTATGATCATAAAAATTGGTACA
GATTTTCTCTATCATGAATGGAAATTCATAGAAGAAAAAAATTAATTACA
TCATCCAAAGTATGATGACGTCATCACAAAATTTCCACCTGTCGCAAAAT
AGGGTAAAAAGTATGGTTTACAAAAAACAACCTCACGGTCGAACGGAAAA
AGATATTTAGGATCTGTTTTCAGATTCTGAAAGGTAAAAGATTGCTTTTT
AACACAATTGCCGGTTTTTATTTCTGAGTAAGATTTACTGTTAAATAAAA
ATCTATGCTGAAAATGAGTAAAATTTCCGAAAACTAATGACATCATCATT
TATAAATTTTTTTTCTAAAATTTCTAGAATTAAATTGTCAATATCTATCA
TCTCTGAACATTTGAATTTGATTGGATGGATAGATTCTACCCTCTCCTGT
TGGGCAAATAGAGTTAAAGACCGTGTTGTTATAGTACGTTCACTCTAACT
TGGATAATCGTTAACAACTTCTAAGTACAAACCTTTTCTTTTCATCATAA
AAACAACGAAAATAAAGTGTTTTGTAAAAAAGACATCCAAGTGAACGCAC
TATAAGGACTGGCTGAAACCGTTTTATATTCAATGTTGCTGACAATAAAA
AATAAGCAGTGGCACGAAGGTTTTAACTTGTTGTTCTAACATCTTAACTT
TTTACACGTTTAGGTTCTGGTAATAATGATCTCGTTGAAAGTGATAGCAG
CAACAGTGACCATGACAGCCTACCAGATAGTGGTGTTGGTAAGAAAATAA
AAGACCAAAAGTTGAAGTGGGAATCATTCAAAAGGAGGAACTTGAAAAAA
GGGCATGTTCTCGTTAAAATAAACCGTGATACAATTCTTTTATCGACAAT
GACTTTGTTCAAGCGTGGAGATATCAAAAACATTTCTATTCCACCAGAAG
TTAAATTTCAAAATGAAGATGGCATCGACGCTACCGGCCCGAGAAAGGAG
TACTTTTTTCATACGATTAAATCTTTTCTCAGCGGAGAAAAAAACATTGT
GTTGTTTGAAGGCCGTGAAGACCGTAAAGTTCCAGTACATGACACTGATC
TGTTGGCTTCAGATTTCTTTTATTATGCTGGGAAATTTGTGGCAATGGCT
TTCTTCCATGGGGAAATTGGAATATGGAGTATTTCGCCTTGCATTCAAGA
ATACATCTTGTCTGGATCCAAAACAGCAGCAATTGCACTTGTAGAAGCGA
AAGATGTGGCTGACTTGGAAACCCAATCTATTTTGGAAAGTGTAAGTTCC
AGTGATAGTTTTCCTTTTTTTATTTTTGGGTTCTCCTTGGACTGTACAAT
TCAATATTACTTTTTTAATACATAGCTGCATCCCCTAGCTTTTAAGGGTT
CGGGATTTCTAAATTTTGGAACTAAGAGGCCGTTTATATGGATCGATCTC
GGAGCGGTTAGACTAGAGTCTTCTTTTGGCTGAACTTTGCTTTTTGATGA
TTTTGATGACGCTGAGTTCAGTAATGTAGACTAGGAGCAATTGGCATTTC
TAACGCAAAGAAAATTTAAAGTGCACCGCTATCGATTCCAATTTCCATAC
CAAGCGATTTTCTCAATTGCGGTGCAGGAACTTCAAGATTTTATTTTTTC
CTGTGAAAGGCCTGGATCGATTGATGGATTTTGCCAACAAGCCGAACAAG
CTAGAGCAAAAAGCTGTCAATATACACTGGGCCAATTAATCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024105XLOC_024105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039828-exon-sc0002212-1575043694:20366..20582TCONS_00039828-exon-sc0002212-1575043694:20366..20582Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1575043694:19899..20056TCONS_00039828-exon-sc0002212-1575043694:19899..20056Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1575043694:16712..16757TCONS_00039828-exon-sc0002212-1575043694:16712..16757Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1575043694:15042..15619TCONS_00039828-exon-sc0002212-1575043694:15042..15619Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1575043694:14589..14673TCONS_00039828-exon-sc0002212-1575043694:14589..14673Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1510915933:20366..20582TCONS_00039828-exon-sc0002212-1510915933:20366..20582Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1510915933:19899..20056TCONS_00039828-exon-sc0002212-1510915933:19899..20056Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1510915933:16712..16757TCONS_00039828-exon-sc0002212-1510915933:16712..16757Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1510915933:15042..15619TCONS_00039828-exon-sc0002212-1510915933:15042..15619Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1510915933:14589..14673TCONS_00039828-exon-sc0002212-1510915933:14589..14673Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1491911889:20366..20582TCONS_00039828-exon-sc0002212-1491911889:20366..20582Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1491911889:19899..20056TCONS_00039828-exon-sc0002212-1491911889:19899..20056Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1491911889:16712..16757TCONS_00039828-exon-sc0002212-1491911889:16712..16757Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1491911889:15042..15619TCONS_00039828-exon-sc0002212-1491911889:15042..15619Clytia hemisphaericaexon
TCONS_00039828-exon-sc0002212-1491911889:14589..14673TCONS_00039828-exon-sc0002212-1491911889:14589..14673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002212supercontigsc0002212:14589..20582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745392	0	0.34224	0.583883	12.0138	8.33002	2.20512	5.5214	4.17374	3.25846	0.226774	2.53221	1.5748	1.95925	0.0485889	1.27035	1.68627	0.327236	0.152459	0	1.11876	2.85263	0	0.339736	1.39304	2.19833	0	0	0	1.23706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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