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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039817 ID=TCONS_00039817|Name=TCONS_00039817|organism=Clytia hemisphaerica|type=transcript|length=517bp
GGAATATATCATTGTGATGCTTCTTATACTTTAAAGTTGACAAAGATGAA
GAAGACGACACTTACATCGACCAAAGCCAAATACTTGTAGATTCAAATGT
CGAGacccTCGAAGAAAGGTTTTGGAAAATTCACGATcacataaaaaaga
aatcaaacaaaacagATGATGATAAACACTTCAGCACATTCatcaaaatc
ctcaaaaatcctGAAAGCTTTAAAGCATTGAGAAGAATTGTTAGCAGAGC
TTGTTTGACGCTCATTGATGAAAAAGAAGAGCTTGTCATGAAAAACATGC
TTGATAAACTCAGCTTTAGTAACTTCCCGATACATGATGTTGTTTTGGAG
GAGATCACTGCTCGGTTTCCAGGGGATACCAATGAGTTagcgacaaaatt
tcttctccattGTGTCATCGAGATCAGCAAATTCAAGGAGTTTAGTCATT
TTGGTAGGTATTTATTTAGTCCACTGTAACTGAGTTACATTTTAAATAGC
TGAGCAGAATAAACATG Run BLAST on NCBI transcript from alignment at sc0002206:19958..21571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039817 ID=TCONS_00039817|Name=TCONS_00039817|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0002206:19958..21571+ (Clytia hemisphaerica)
GGAATATATCATTGTGATGCTTCTTATACTTTAAAGTTGACAAAGATGAA
GAAGACGACACTTACATCGACCAAAGCCAAATACTTGTAGATTCAAATGT
CGAGGTAAATACATTTACGAAATTCTTACGTGGGAGCAAGGTCGAGAAAA
GCATAAATTTTATCTAAAATGCAATGCAATGTTTTTTCTACTGGAATAAG
GTAATATAAACAATTACAATCTGGGATTTTGGCTCAAAGATAGGATGGTA
CAATTAAGTTTCAACATTCTAATCCACCTTTTCTCAGAGATTTGAAATAG
TATTTCCAGCAAATGTCACAACAGTTGAAGCTTCACTTTAAGAGTTGATT
GTAGCTTCTTTGTAATCCCGTactgtaattttcatttttttatttcagac
ccTCGAAGAAAGGTTTTGGAAAATTCACGATcacataaaaaagaaatcaa
acaaaacagGTATTTATCATGCGCCGCTTTTATGCTTTTTCTAAGACCTA
CTTTGGCCGGTTGAAAGACCATAACGAGGTATTCCATCGTTACGTGTGTG
ATATTTGAGAGAAATATGAACAGTTAATTTCCTAATTTAAtttgaacaaa
agaatttcaaaatatagTTAGCTAATGCCATTTTTCATAAATTGCAGTTT
TGGAAATTCGTTTCAAACTATCTATAAATTCAGATAAATTACCTAAACCT
TTTCGGTTAATTTAAGTAATGATCATTGGCTACATCCTCTGAGCATTGAT
ATGAGAATTTTCCTAGCAGCTAGATCAATAACCTGGAAAAATCttagaat
tttttctaaatatgCTGTTGATAAAGcttgtacacgcttttttattataa
gaatatcttctataagaatatcagggtgaaaaatggccaaatcgtaagaa
tacacTAAGAATACCCGCTTGGGTGAATTTCATAGCATTTTGGGAGCATT
TTATAATAATACAATCAATTTGTATTTAGTTAACAtaaaaaaaactgctt
cattTATTAGACTTGAATTCGAACTTTGAAGTAGAAATGTAATCTTGGCT
ccaaatgttcattcaaaaatccaaaactctcaaatttatCATTTCTCTTG
TTTATAAAAAGTCAAGTAAGAAAATAacaatacgttaagaatatttcacc
ctcaattttggcaatttcttaagaatacttgaccctcagcAAAAAAagac
tattcttataaaaaaagcgtgtataaagTAGGTATTGATTAATTTTCCTC
GTTTTAATTTAGATGATGATAAACACTTCAGCACATTCatcaaaatcctc
aaaaatcctGAAAGCTTTAAAGCATTGAGAAGAATTGTTAGCAGAGCTTG
TTTGACGCTCATTGATGAAAAAGAAGAGCTTGTCATGAAAAACATGCTTG
ATAAACTCAGCTTTAGTAACTTCCCGATACATGATGTTGTTTTGGAGGAG
ATCACTGCTCGGTTTCCAGGGGATACCAATGAGTTagcgacaaaatttct
tctccattGTGTCATCGAGATCAGCAAATTCAAGGAGTTTAGTCATTTTG
GTAGGTATTTATTTAGTCCACTGTAACTGAGTTACATTTTAAATAGCTGA
GCAGAATAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039817-exon-sc0002206-1491911889:19958..20061 | TCONS_00039817-exon-sc0002206-1491911889:19958..20061 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1510915933:19958..20061 | TCONS_00039817-exon-sc0002206-1510915933:19958..20061 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1575043694:19958..20061 | TCONS_00039817-exon-sc0002206-1575043694:19958..20061 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1491911889:20356..20416 | TCONS_00039817-exon-sc0002206-1491911889:20356..20416 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1510915933:20356..20416 | TCONS_00039817-exon-sc0002206-1510915933:20356..20416 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1575043694:20356..20416 | TCONS_00039817-exon-sc0002206-1575043694:20356..20416 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1491911889:21220..21571 | TCONS_00039817-exon-sc0002206-1491911889:21220..21571 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1510915933:21220..21571 | TCONS_00039817-exon-sc0002206-1510915933:21220..21571 | Clytia hemisphaerica | exon |
| TCONS_00039817-exon-sc0002206-1575043694:21220..21571 | TCONS_00039817-exon-sc0002206-1575043694:21220..21571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002206 | supercontig | sc0002206:19958..21571 + |
Blast
The following BLAST results are available for this feature:
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