TCONS_00039805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039805
Unique NameTCONS_00039805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039805 ID=TCONS_00039805|Name=TCONS_00039805|organism=Clytia hemisphaerica|type=transcript|length=586bp
NTATACAGCTGTAACATAAATTGGGTCTGGAGACTTCACAATAAGTAGAT
TGCTTTTTTGGTTTCAACTACCCTGGGACTTGGTTCCCTTTCTTTCCCTG
AAACATACCCCACAGAGATACAGTGCTTAGATTAAAAGTTATGTCACCAT
CCTCAAATAATCTTATTATATTTAGCAGATCCCTTGCATTAAATGTCCAA
ACAATTTTACCCTCAGATCTCGATTCAGACCATCCTGCCTTGCTCATAtg
gctgtcctccttacagtcctTCGACAGGCCGTCATCCCTACGGTCTTAGA
CACCTAAGTCCAATCATCCTCATTACAATCTAGACTAAAATCAATCATCC
CTATCAGGACATGGGCTCAGGTTATTCTCACCAGGATATAGGCTCAGGCC
ATCTTCATCAAATACATAGGCTCAGGCTATTCTCATTATGACCTATAGGG
AAAACTTTTAAAGCACTAAGACCAAGACTGTCATCCTTTTATAAGAGTTA
GCTTCCTAATGTGTAATGACTTCTTTTTGAGTTTGGCTGCTGATTTGGGG
ATGTATTGTGCGGGTAGTTTTGGGGACGTTTTGGGG
Run BLAST on NCBI

transcript from alignment at sc0002204:16395..16980

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039805 ID=TCONS_00039805|Name=TCONS_00039805|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0002204:16395..16980 (Clytia hemisphaerica)
CCCCAAAACGTCCCCAAAACTACCCGCACAATACATCCCCAAATCAGCAG
CCAAACTCAAAAAGAAGTCATTACACATTAGGAAGCTAACTCTTATAAAA
GGATGACAGTCTTGGTCTTAGTGCTTTAAAAGTTTTCCCTATAGGTCATA
ATGAGAATAGCCTGAGCCTATGTATTTGATGAAGATGGCCTGAGCCTATA
TCCTGGTGAGAATAACCTGAGCCCATGTCCTGATAGGGATGATTGATTTT
AGTCTAGATTGTAATGAGGATGATTGGACTTAGGTGTCTAAGACCGTAGG
GATGACGGCCTGTCGAaggactgtaaggaggacagccaTATGAGCAAGGC
AGGATGGTCTGAATCGAGATCTGAGGGTAAAATTGTTTGGACATTTAATG
CAAGGGATCTGCTAAATATAATAAGATTATTTGAGGATGGTGACATAACT
TTTAATCTAAGCACTGTATCTCTGTGGGGTATGTTTCAGGGAAAGAAAGG
GAACCAAGTCCCAGGGTAGTTGAAACCAAAAAAGCAATCTACTTATTGTG
AAGTCTCCAGACCCAATTTATGTTACAGCTGTATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024087XLOC_024087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039805-exon-sc0002204-1491911889:16395..16980TCONS_00039805-exon-sc0002204-1491911889:16395..16980Clytia hemisphaericaexon
TCONS_00039805-exon-sc0002204-1510915933:16395..16980TCONS_00039805-exon-sc0002204-1510915933:16395..16980Clytia hemisphaericaexon
TCONS_00039805-exon-sc0002204-1575043694:16395..16980TCONS_00039805-exon-sc0002204-1575043694:16395..16980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002204supercontigsc0002204:16395..16980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.826175	0.200047	0.192343	0.414369	4.46085	2.02726	2.89527	1.62637	1.52736	4.58371	1.72551	0.61516	2.15203	1.30562	0.474934	0.891742	0.600426	0.14256	0	0	0.354877	0	0	0	1.21064	2.98304	1.34387	0.206541	0.862897	0.130392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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