TCONS_00039797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039797
Unique NameTCONS_00039797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039797 ID=TCONS_00039797|Name=TCONS_00039797|organism=Clytia hemisphaerica|type=transcript|length=356bp
GAGAAAGATAACGGTGTATTTGCATAACGTAAGCACACATTGAAATGGTA
GTCCAGCAAGATTACACATTTAAACGTAAACACGCTTTGAGGAGGCATCA
AATGGAAATGAAGTATTAAATAAATAGAGGCACCAAAGATTATGTACCGT
ATGGGAAAGAGGAATCCCAGAAAGATGTAAAGGAAAAACTTTCGAAATCA
GCAAAAGGCTAAGATagaattcaatgtaaaaaaaaagggaTGAGAAATAT
TATGCGCAAAAtgagagaaaaattaaaataaaactaGAAGATTTAAATTA
AAATCAATGAATCAAGCATGAACACATGCTGAATGTGAGGAAGCAGTTAA
GCGAAt
Run BLAST on NCBI

transcript from alignment at sc0002202:12787..13142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039797 ID=TCONS_00039797|Name=TCONS_00039797|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0002202:12787..13142 (Clytia hemisphaerica)
aTTCGCTTAACTGCTTCCTCACATTCAGCATGTGTTCATGCTTGATTCAT
TGATTTTAATTTAAATCTTCtagttttattttaatttttctctcaTTTTG
CGCATAATATTTCTCAtccctttttttttacattgaattctATCTTAGCC
TTTTGCTGATTTCGAAAGTTTTTCCTTTACATCTTTCTGGGATTCCTCTT
TCCCATACGGTACATAATCTTTGGTGCCTCTATTTATTTAATACTTCATT
TCCATTTGATGCCTCCTCAAAGCGTGTTTACGTTTAAATGTGTAATCTTG
CTGGACTACCATTTCAATGTGTGCTTACGTTATGCAAATACACCGTTATC
TTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024079XLOC_024079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039797-exon-sc0002202-1491911889:12787..13142TCONS_00039797-exon-sc0002202-1491911889:12787..13142Clytia hemisphaericaexon
TCONS_00039797-exon-sc0002202-1510915933:12787..13142TCONS_00039797-exon-sc0002202-1510915933:12787..13142Clytia hemisphaericaexon
TCONS_00039797-exon-sc0002202-1575043694:12787..13142TCONS_00039797-exon-sc0002202-1575043694:12787..13142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002202supercontigsc0002202:12787..13142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.50249	0	1.77286	1.17137	2.41224	2.29034	0.203377	0	0.244515	0.183539	0.535874	1.16685	0.411131	0.932662	0.379125	0	1.53933	0.268466	0.767919	0.492297	0.141867	1.34936	0.666016	0	5.27466	4.91143	1.56666	1.02899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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