TCONS_00039793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039793
Unique NameTCONS_00039793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039793 ID=TCONS_00039793|Name=TCONS_00039793|organism=Clytia hemisphaerica|type=transcript|length=408bp
CATAGGTTATAGCAGGAAACTTAAAGCGCAAAACGAAAGACTTCAAGCCA
AGATTGAACACTTTCGTGAGAAAATGAGTTTCACTAATATGTGAGTGAGT
TTACTTGGAAATAATTGCGCAGTTTATTACATAAAATATTGCAACTGTTA
GATGTCAGAAGAGATGATGTCTTTGAAAGAAAACTTGAGTTGCCAGACAT
GAGATGTTAGATATTATCGCCATGAAAAGTGAACGATATGAGAATTCGCT
ACCCTCCATCGCATTGAAAATTGACACTCATTCTATCCGACGACGAAGTC
TTTCTGACACTATGGTTCAATTAACATTTTATTATATCActagaaataaa
tattttattatttaaggCTGTGAACCGTTAGGGTACCAGTAAAAAGGAAT
TGTTTTAT
Run BLAST on NCBI

transcript from alignment at sc0002202:4523..4930

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039793 ID=TCONS_00039793|Name=TCONS_00039793|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0002202:4523..4930 (Clytia hemisphaerica)
ATAAAACAATTCCTTTTTACTGGTACCCTAACGGTTCACAGccttaaata
ataaaatatttatttctagTGATATAATAAAATGTTAATTGAACCATAGT
GTCAGAAAGACTTCGTCGTCGGATAGAATGAGTGTCAATTTTCAATGCGA
TGGAGGGTAGCGAATTCTCATATCGTTCACTTTTCATGGCGATAATATCT
AACATCTCATGTCTGGCAACTCAAGTTTTCTTTCAAAGACATCATCTCTT
CTGACATCTAACAGTTGCAATATTTTATGTAATAAACTGCGCAATTATTT
CCAAGTAAACTCACTCACATATTAGTGAAACTCATTTTCTCACGAAAGTG
TTCAATCTTGGCTTGAAGTCTTTCGTTTTGCGCTTTAAGTTTCCTGCTAT
AACCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024075XLOC_024075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039793-exon-sc0002202-1491911889:4523..4930TCONS_00039793-exon-sc0002202-1491911889:4523..4930Clytia hemisphaericaexon
TCONS_00039793-exon-sc0002202-1510915933:4523..4930TCONS_00039793-exon-sc0002202-1510915933:4523..4930Clytia hemisphaericaexon
TCONS_00039793-exon-sc0002202-1575043694:4523..4930TCONS_00039793-exon-sc0002202-1575043694:4523..4930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002202supercontigsc0002202:4523..4930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.219464	0.385197	0	7.32009	4.85088	10.647	12.1826	1.99597	0.360766	0.957884	1.3736	1.52347	0.224025	0	1.64379	0	0.828712	0.567767	3.94005	0	3.61038	1.48923	2.85117	1.24077	2.4698	4.53234	4.20759	0.60679	2.45604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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