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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039791 ID=TCONS_00039791|Name=TCONS_00039791|organism=Clytia hemisphaerica|type=transcript|length=1242bp
GATTGAAAGGAGAGAAGTGGCCATAGAAAAGCAATTTTGTTTTATATGAT
TTTGTCAACCCCTTGCCCTCTGTTACACTCTTATTtccttcatttttgta
tttttcttttctagcaaaattataataaataaatGGATGAAGAGATGAAC
CTCCCCCCTCCACCTTCGCCAGCATCAACTGTCGCTTACGTAAGAGTTGA
ATCTTTAAAAATTCACTTTGATTATGGTAATAATCGATTATTAACACAAT
gtgtattctattgttctatatcgtgaaaatcaagtttttagtcaaattta
tAGCTTGTCGCAACGTAAAATTTTGACAGGTCATATGACACAACTTTTAA
TTATCCAATCAGTTCCTTAACAATGGTTGACAGTTGTATTGCAAGGCTAC
AATATTCTTTCTTATAAGTGGTTGTTTTGTAGTTTTCAGACTTTTCTGTA
CAATATAGCTTCACtgtatttatctttttttatcacGGTTTAGATAATGA
TGAAGAAGGTGGGGTAACAGCGGAGCACGTCGTGGTCATCGTCCAAGATA
CCAAACAGGTTTCGGAGGACGATGACCTCACTCAATCACTCGATGGAAGT
TTTGAAGAACCAGCTAAGCAGATTAATCAAGTAGTCAATCATATTTTAGA
GATTGGGCAAGAGGATGAACAGCTTTTACAGAATCAAGGAGTTGTTAATG
GTGTTAATCAAGAACTAGAATTGAATCAGGAACCAGAATTGAATCAGGAA
CCAGAATTGAATCAGGAACCAGAATTGAATCAGGAACTAGAATTGAATCA
GGAACTAGAATTGAATCAGGAACTAGAATTGAATCAGGAACCAGAATTGA
ATCAGGAACCAGAATTGAATCTACTAAATCAGGTTCAAGGAATAGTTAAT
GGTGGAAATGGTAACGGACAAGGCGGTGGAAACGGTAACGCACGAGGCGG
TGGAAACGGTAACGCAAGAGGCGATGGCAACGGTCCTGCACGAGGTCGTG
GTAACGGTCCTGCACGAGGTCGTGGTAACGGTCCTGCACGAGGTCGTGGT
AACGGTCCTGCACGAGGTCGTGGTAACGGTCCTGCACGAGGTCGTGGTAA
CGGTCCTGCACGAGGTCGTGGTAACGGTCCTGCACGAGGTCGTGGTAACG
GTCCTGCACGAGGTCGTGGTAACGGTCATGCACAGGGTATTGCACGGGGC
GGTGGTAATGGATATAATTATCGTGGACGTGGGGGGTTCGAC Run BLAST on NCBI protein sequence of TCONS_00039791-protein >TCONS_00039791-protein ID=TCONS_00039791-protein|Name=TCONS_00039791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
VEPPTSTIIISITTAPCNTLCMTVTTTSCRTVTTTSCRTVTTTSCRTVTT
TSCRTVTTTSCRTVTTTSCRTVTTTSCRTVTTTSCRTVAIASCVTVSTAS
CVTVSTALSVTISTINYSLNLI Run BLAST on NCBI transcript from alignment at sc0002201:16956..18197 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039791 ID=TCONS_00039791|Name=TCONS_00039791|organism=Clytia hemisphaerica|type=transcript|length=1242bp|location=Sequence derived from alignment at sc0002201:16956..18197 (Clytia hemisphaerica)
GTCGAACCCCCCACGTCCACGATAATTATATCCATTACCACCGCCCCGTG
CAATACCCTGTGCATGACCGTTACCACGACCTCGTGCAGGACCGTTACCA
CGACCTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACG
ACCTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACGAC
CTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACGACCT
CGTGCAGGACCGTTGCCATCGCCTCTTGCGTTACCGTTTCCACCGCCTCG
TGCGTTACCGTTTCCACCGCCTTGTCCGTTACCATTTCCACCATTAACTA
TTCCTTGAACCTGATTTAGTAGATTCAATTCTGGTTCCTGATTCAATTCT
GGTTCCTGATTCAATTCTAGTTCCTGATTCAATTCTAGTTCCTGATTCAA
TTCTAGTTCCTGATTCAATTCTGGTTCCTGATTCAATTCTGGTTCCTGAT
TCAATTCTGGTTCCTGATTCAATTCTAGTTCTTGATTAACACCATTAACA
ACTCCTTGATTCTGTAAAAGCTGTTCATCCTCTTGCCCAATCTCTAAAAT
ATGATTGACTACTTGATTAATCTGCTTAGCTGGTTCTTCAAAACTTCCAT
CGAGTGATTGAGTGAGGTCATCGTCCTCCGAAACCTGTTTGGTATCTTGG
ACGATGACCACGACGTGCTCCGCTGTTACCCCACCTTCTTCATCATTATC
TAAACCgtgataaaaaaagataaatacaGTGAAGCTATATTGTACAGAAA
AGTCTGAAAACTACAAAACAACCACTTATAAGAAAGAATATTGTAGCCTT
GCAATACAACTGTCAACCATTGTTAAGGAACTGATTGGATAATTAAAAGT
TGTGTCATATGACCTGTCAAAATTTTACGTTGCGACAAGCTataaatttg
actaaaaacttgattttcacgatatagaacaatagaatacacATTGTGTT
AATAATCGATTATTACCATAATCAAAGTGAATTTTTAAAGATTCAACTCT
TACGTAAGCGACAGTTGATGCTGGCGAAGGTGGAGGGGGGAGGTTCATCT
CTTCATCCatttatttattataattttgctagaaaagaaaaatacaaaaa
tgaaggaAATAAGAGTGTAACAGAGGGCAAGGGGTTGACAAAATCATATA
AAACAAAATTGCTTTTCTATGGCCACTTCTCTCCTTTCAATC Coding sequence (CDS) from alignment at sc0002201:16956..18197 >TCONS_00039791 ID=TCONS_00039791|Name=TCONS_00039791|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0002201:16956..18197 (Clytia hemisphaerica)
GTCGAACCCCCCACGTCCACGATAATTATATCCATTACCACCGCCCCGTG
CAATACCCTGTGCATGACCGTTACCACGACCTCGTGCAGGACCGTTACCA
CGACCTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACG
ACCTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACGAC
CTCGTGCAGGACCGTTACCACGACCTCGTGCAGGACCGTTACCACGACCT
CGTGCAGGACCGTTGCCATCGCCTCTTGCGTTACCGTTTCCACCGCCTCG
TGCGTTACCGTTTCCACCGCCTTGTCCGTTACCATTTCCACCATTAACTA
TTCCTTGAACCTGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039791-exon-sc0002201-1491911889:16956..18197 | TCONS_00039791-exon-sc0002201-1491911889:16956..18197 | Clytia hemisphaerica | exon |
| TCONS_00039791-exon-sc0002201-1510915933:16956..18197 | TCONS_00039791-exon-sc0002201-1510915933:16956..18197 | Clytia hemisphaerica | exon |
| TCONS_00039791-exon-sc0002201-1575043694:16956..18197 | TCONS_00039791-exon-sc0002201-1575043694:16956..18197 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002201 | supercontig | sc0002201:16956..18197 . |
Blast
The following BLAST results are available for this feature:
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