TCONS_00039790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039790
Unique NameTCONS_00039790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039790 ID=TCONS_00039790|Name=TCONS_00039790|organism=Clytia hemisphaerica|type=transcript|length=329bp
TGAATTTTGGCGGccaacaagatggcggacgacTTCCACCGAAATAACCT
TCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATC
AAGTTAAgtataaatttttctttattattactTTGTAACTTTAGTTTGCT
TTTGAAGCCAGCAGGAAGTTTTGAGAGGAATTTTAAGTATAATTTGATAG
TGGCTTTTTGACTTTagctgtttgtttttatttttcaaagtgaaatttAT
TCATATAAGGATATAACTTGACGAAATTAAACTGTTAGAGtattttttac
atttctttgattgttttttgtgtttttaa
Run BLAST on NCBI

transcript from alignment at sc0002200:22405..22733-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039790 ID=TCONS_00039790|Name=TCONS_00039790|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0002200:22405..22733- (Clytia hemisphaerica)
TGAATTTTGGCGGCCAACAAGATGGCGGACGACTTCCACCGAAATAACCT
TCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATC
AAGTTAAGTATAAATTTTTCTTTATTATTACTTTGTAACTTTAGTTTGCT
TTTGAAGCCAGCAGGAAGTTTTGAGAGGAATTTTAAGTATAATTTGATAG
TGGCTTTTTGACTTTAGCTGTTTGTTTTTATTTTTCAAAGTGAAATTTAT
TCATATAAGGATATAACTTGACGAAATTAAACTGTTAGAGTATTTTTTAC
ATTTCTTTGATTGTTTTTTGTGTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024072XLOC_024072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039790-exon-sc0002200-1575043694:22405..22733TCONS_00039790-exon-sc0002200-1575043694:22405..22733Clytia hemisphaericaexon
TCONS_00039790-exon-sc0002200-1510915933:22405..22733TCONS_00039790-exon-sc0002200-1510915933:22405..22733Clytia hemisphaericaexon
TCONS_00039790-exon-sc0002200-1491911889:22405..22733TCONS_00039790-exon-sc0002200-1491911889:22405..22733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002200supercontigsc0002200:22405..22733 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75925	1.22094	0.516753	0.899485	2.3921	3.27288	1.80818	1.0675	3.97486	1.05796	3.77795	2.53384	0.952865	3.17446	0.805816	0.66714	3.64315	0.696901	0.454727	0.32886	1.53789	0.984338	0	0	1.55113	2.1103	1.90851	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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