TCONS_00039789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039789
Unique NameTCONS_00039789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039789 ID=TCONS_00039789|Name=TCONS_00039789|organism=Clytia hemisphaerica|type=transcript|length=321bp
CACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTT
CGGAAGTCTTGTAAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGC
TTCTACACGTACATATTTTTTATGCATCCATTATCTACCATTTGACTATT
ATATCTTTCGATGAATATTTGcttcttgataaaaaaaatcatttaacttC
AAGCAAGGAAAGTTTATGAACAACTTTTCTAATATATATTTTGACAGTTA
AACCAAAAATTTGGTTTACAGTTACTGGCCCTATTTTGGTTCTTTATATT
TTAAACATTGTAACATCTGGC
Run BLAST on NCBI

transcript from alignment at sc0002200:21522..21842-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039789 ID=TCONS_00039789|Name=TCONS_00039789|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0002200:21522..21842- (Clytia hemisphaerica)
CACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTT
CGGAAGTCTTGTAAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGC
TTCTACACGTACATATTTTTTATGCATCCATTATCTACCATTTGACTATT
ATATCTTTCGATGAATATTTGCTTCTTGATAAAAAAAATCATTTAACTTC
AAGCAAGGAAAGTTTATGAACAACTTTTCTAATATATATTTTGACAGTTA
AACCAAAAATTTGGTTTACAGTTACTGGCCCTATTTTGGTTCTTTATATT
TTAAACATTGTAACATCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024072XLOC_024072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039789-exon-sc0002200-1575043694:21522..21842TCONS_00039789-exon-sc0002200-1575043694:21522..21842Clytia hemisphaericaexon
TCONS_00039789-exon-sc0002200-1510915933:21522..21842TCONS_00039789-exon-sc0002200-1510915933:21522..21842Clytia hemisphaericaexon
TCONS_00039789-exon-sc0002200-1491911889:21522..21842TCONS_00039789-exon-sc0002200-1491911889:21522..21842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002200supercontigsc0002200:21522..21842 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699241	0	0.35862	0	2.48214	1.29073	0.929833	0.870127	1.01454	1.16399	0	0.940576	0.631945	0	0.646028	0.663692	0.290025	0.326929	0	0	6.19843	3.64408	2.43268	1.55421	0.680122	0.303496	2.17399	1.30564	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top