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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039786 ID=TCONS_00039786|Name=TCONS_00039786|organism=Clytia hemisphaerica|type=transcript|length=302bp
CACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTT
CGGAAGTCTTCATCAAAGCAAATGCTGCATGCAATAACCACTGGATATTT
ATTACAAGGAAATTTACTTTCAGaagctaTAATCAAAATGGCAAGCAGCA
AGGAAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGGTAAGG
AGTTCAAATTATTGTTTATGTACGAGTATTTTCAAGATAGCAGGAGTAAC
ACATAGCATGCACCCCCTGAGCTTAAGGGAGGGGCTAAACCATTGTTGCT
AG Run BLAST on NCBI transcript from alignment at sc0002200:20127..21842- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039786 ID=TCONS_00039786|Name=TCONS_00039786|organism=Clytia hemisphaerica|type=transcript|length=1716bp|location=Sequence derived from alignment at sc0002200:20127..21842- (Clytia hemisphaerica)
CACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTT
CGGAAGTCTTGTAAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGC
TTCTACACGTACATATTTTTTATGCATCCATTATCTACCATTTGACTATT
ATATCTTTCGATGAATATTTGCTTCTTGATAAAAAAAATCATTTAACTTC
AAGCAAGGAAAGTTTATGAACAACTTTTCTAATATATATTTTGACAGTTA
AACCAAAAATTTGGTTTACAGTTACTGGCCCTATTTTGGTTCTTTATATT
TTAAACATTGTAACATCTGGCATATGTGTAGTCATCTAGCATGCCAAACA
CATATCAGCATTAGCCATTCAATTTGGGTGTCAAAATGTGGATGGAACTT
TGTTTAAAACTAAAGGACAAGCTTAAATTGTAATAACCGAATTGATACAA
AATCTTGATAGCACTTTTATATCAGGTGTGCATGCTGTTAGTCATTTTAC
ATGCCAAAACAGCATCATCAGTCAAAACATTCTAAACCATGTTTAAACTG
TACAAATCATGATTAATTGGACTATCATTTTTTTGTATTGTTTTGTTATT
ACTTTCTATAGCTTTCAAAAATACTACTAGCTTGTGTACTCAACAAAATA
GTTTACAAATTAATAAGATAAAAAATATGTATTGTTTGAGAAAAGTTAAC
TTTTCAAAACAAAAAATAGTCGAATCCAGCTATCTTAAAGTTTAAATTTT
TTTGTTGGTCTTAGCTATTCTGTTTTAGACAGCTTTTGAAGTATGATCTC
TCTCACAATGAAGTGGTGAGGCAAGTTTTATTGTCGTACTCATTTTCAAG
TTTCGTAATAATATGGGTTACTTATAATAGTCGAAGTGTTTTTCCATCAA
CCTTAATCATGCAACATTCCTTGTGGTACATATTACTTCATATTAAACAT
TATCTTTGAAGAGTGAGATGTAAAAATTCAAAGTTTATTATTCATCAATG
AGATCTCTTCATGTATGTCTATCTTTCTTCAGTGCAATGACTTTTTACAA
TGAAATTTTCAAATCTGTCTTGAATTTTTTTTGTCAAGCCCGATATTAGA
GATGGTAAATTCCTTTTCTTCTTTTTCTTCTAGCATCAAAGCAAATGCTG
CATGCAATAACCACTGGATATTTATTACAAGGAAATTTACTTTCAGGTAA
GTTATTCCTCTCAGGTTTTCCCTTAAAGAGAGATGATGTTTTGCTTTATA
CCCTAACCGTAGATCCTCTGCCAATATGGAGATGTCTTTTTCTCTAGAAA
TTCTCAATTTTTATAGACCGCCACAGTGCTACGGTGGCCTCAAAAGCTCA
CAGTATACTTGCAGTTCTGGCACACTTCCAGTTCACAAATTTTATAAGAA
CTGGAACTGTCCTGGATCAATGATGCAGAAGCAGAAGACCCAGAAGGTTC
TAATTACACACTGCGCTACGTTTTATGGTGAATCTTACATGTTGTGTGTT
AAATTTTGTTTCAGTTTAATTTGTTTTTCATTTTCAGAAGCTATAATCAA
AATGGCAAGCAGCAAGGAAAGATAACATAAAGGAGAGCTACCCAGGCAGA
TACCCGAGGTAAGGAGTTCAAATTATTGTTTATGTACGAGTATTTTCAAG
ATAGCAGGAGTAACACATAGCATGCACCCCCTGAGCTTAAGGGAGGGGCT
AAACCATTGTTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039786-exon-sc0002200-1575043694:21783..21842 | TCONS_00039786-exon-sc0002200-1575043694:21783..21842 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1575043694:20647..20709 | TCONS_00039786-exon-sc0002200-1575043694:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1575043694:20127..20305 | TCONS_00039786-exon-sc0002200-1575043694:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1510915933:21783..21842 | TCONS_00039786-exon-sc0002200-1510915933:21783..21842 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1510915933:20647..20709 | TCONS_00039786-exon-sc0002200-1510915933:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1510915933:20127..20305 | TCONS_00039786-exon-sc0002200-1510915933:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1491911889:21783..21842 | TCONS_00039786-exon-sc0002200-1491911889:21783..21842 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1491911889:20647..20709 | TCONS_00039786-exon-sc0002200-1491911889:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039786-exon-sc0002200-1491911889:20127..20305 | TCONS_00039786-exon-sc0002200-1491911889:20127..20305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002200 | supercontig | sc0002200:20127..21842 - |
Blast
The following BLAST results are available for this feature:
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