TCONS_00039782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039782
Unique NameTCONS_00039782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039782 ID=TCONS_00039782|Name=TCONS_00039782|organism=Clytia hemisphaerica|type=transcript|length=374bp
GTCGACTGGTCGAAATGGGAAGGTCTATGTTTATGATAGCATCTACTCAA
AAGCTGATATAAAATTACAAAAGCAGTTGTGtcaaatttacaagtttttt
gttGAAGATGTTTATTTTCCTAAAGTTTTGAAGCAACACGGAACTAATGA
CTGTGGTTATTTTTGCATAGCTAAGCATATTCCAGGCTCGGATATGAAGA
AAATTAAATGTAAGTTTTCACCAATTTTGGATTGATTTTCGCGagccaat
ttctttcaaaaataaggACTTATTTCCACGAGCACAGAAAATATTTACGC
GAGgataatttcgcgaatcagcccctttttgaactaatttcttttatttt
ctttcctaaGGGTTTCGACAAAAG
Run BLAST on NCBI

transcript from alignment at sc0002198:9689..10062

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039782 ID=TCONS_00039782|Name=TCONS_00039782|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0002198:9689..10062 (Clytia hemisphaerica)
CTTTTGTCGAAACCCttaggaaagaaaataaaagaaattagttcaaaaag
gggctgattcgcgaaattatcCTCGCGTAAATATTTTCTGTGCTCGTGGA
AATAAGTccttatttttgaaagaaattggctCGCGAAAATCAATCCAAAA
TTGGTGAAAACTTACATTTAATTTTCTTCATATCCGAGCCTGGAATATGC
TTAGCTATGCAAAAATAACCACAGTCATTAGTTCCGTGTTGCTTCAAAAC
TTTAGGAAAATAAACATCTTCaacaaaaaacttgtaaatttgaCACAACT
GCTTTTGTAATTTTATATCAGCTTTTGAGTAGATGCTATCATAAACATAG
ACCTTCCCATTTCGACCAGTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024069XLOC_024069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039782-exon-sc0002198-1491911889:9689..10062TCONS_00039782-exon-sc0002198-1491911889:9689..10062Clytia hemisphaericaexon
TCONS_00039782-exon-sc0002198-1510915933:9689..10062TCONS_00039782-exon-sc0002198-1510915933:9689..10062Clytia hemisphaericaexon
TCONS_00039782-exon-sc0002198-1575043694:9689..10062TCONS_00039782-exon-sc0002198-1575043694:9689..10062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002198supercontigsc0002198:9689..10062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.363509	0.335008	0.293798	0	1.94115	1.45057	0.350882	2.09545	0	1.19649	1.18958	0	1.05576	0.490849	0.17791	0.471932	1.47059	0.765749	0.298753	0	2.15381	2.21984	1.3529	1.54703	0.487681	2.10986	1.05896	0	0.549464	0.524984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top