TCONS_00039779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039779
Unique NameTCONS_00039779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039779 ID=TCONS_00039779|Name=TCONS_00039779|organism=Clytia hemisphaerica|type=transcript|length=761bp
ATTACACCAGAAGATCTATTGTcatcgttcaaaaattttgtagCTCTTGA
TGAAAAGGAGGTGATGGAAAAGATTGGAAGGGAAGATTTCGATGACATCA
AAGATGGCCTCGTGGAAATACTCGACGATTATAACTGTAAAACGATGCCA
TCAACTGAAAATATCAATGAGCTTCTAATTAAGATAGCTCATGCAGAGCT
CATTCAAAAGCCGCGATATATCGCCAACTGTCTCGGCGAAGTActtaaaa
atttcaagaaaatgcccCTGGATAGTATAGAAAGTCTTAGAGCTTTCTAT
AAAACCAAGTTACCAACTGTGCGTGCCACAATTAAATGCATTTCAACACG
TCAAGACACGCCTGGCAAAGTCAGGGTGTTTGGTTTCTTAACTAAATATC
TAAAAACTCTTAACAAAATGGACTTTTTATAAGATTCGTTACTGGTGGAG
ATTTGTTACCGGAGGTAATAACTGTTGATTTCGTTGATAACCAAGACCCC
AGAATGCCAAGAGCACAGACGTGTACCGGGGTTCTGATGTTGTCTACCAC
GTATGCTTTGTTGAGTGACCTCACCCAAGATTTCGCCAATATTCTCCAAT
TCCCTGGAACATTTCGTTTCACTAATGGTTAATCACAAGTCATGAACTCT
TGATTGGATGATACAGTTACCAGGATTTTTTAACATTTACTCTaatatta
tttcaatttttgatctTAGTTTGTTTTGACAACCGATTATTAGGGTAAAA
GTATTTGGTTG
Run BLAST on NCBI

protein sequence of TCONS_00039779-protein

>TCONS_00039779-protein ID=TCONS_00039779-protein|Name=TCONS_00039779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
ITPEDLLSSFKNFVALDEKEVMEKIGREDFDDIKDGLVEILDDYNCKTMP
STENINELLIKIAHAELIQKPRYIANCLGEVLKNFKKMPLDSIESLRAFY
KTKLPTVRATIKCISTRQDTPGKVRVFGFLTKYLKTLNKMDFL
Run BLAST on NCBI

transcript from alignment at sc0002197:26013..26773

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039779 ID=TCONS_00039779|Name=TCONS_00039779|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0002197:26013..26773 (Clytia hemisphaerica)
CAACCAAATACTTTTACCCTAATAATCGGTTGTCAAAACAAACTAagatc
aaaaattgaaataatattAGAGTAAATGTTAAAAAATCCTGGTAACTGTA
TCATCCAATCAAGAGTTCATGACTTGTGATTAACCATTAGTGAAACGAAA
TGTTCCAGGGAATTGGAGAATATTGGCGAAATCTTGGGTGAGGTCACTCA
ACAAAGCATACGTGGTAGACAACATCAGAACCCCGGTACACGTCTGTGCT
CTTGGCATTCTGGGGTCTTGGTTATCAACGAAATCAACAGTTATTACCTC
CGGTAACAAATCTCCACCAGTAACGAATCTTATAAAAAGTCCATTTTGTT
AAGAGTTTTTAGATATTTAGTTAAGAAACCAAACACCCTGACTTTGCCAG
GCGTGTCTTGACGTGTTGAAATGCATTTAATTGTGGCACGCACAGTTGGT
AACTTGGTTTTATAGAAAGCTCTAAGACTTTCTATACTATCCAGgggcat
tttcttgaaatttttaagTACTTCGCCGAGACAGTTGGCGATATATCGCG
GCTTTTGAATGAGCTCTGCATGAGCTATCTTAATTAGAAGCTCATTGATA
TTTTCAGTTGATGGCATCGTTTTACAGTTATAATCGTCGAGTATTTCCAC
GAGGCCATCTTTGATGTCATCGAAATCTTCCCTTCCAATCTTTTCCATCA
CCTCCTTTTCATCAAGAGctacaaaatttttgaacgatgACAATAGATCT
TCTGGTGTAAT

Coding sequence (CDS) from alignment at sc0002197:26013..26773

>TCONS_00039779 ID=TCONS_00039779|Name=TCONS_00039779|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0002197:26013..26773 (Clytia hemisphaerica)
TTATAAAAAGTCCATTTTGTTAAGAGTTTTTAGATATTTAGTTAAGAAAC
CAAACACCCTGACTTTGCCAGGCGTGTCTTGACGTGTTGAAATGCATTTA
ATTGTGGCACGCACAGTTGGTAACTTGGTTTTATAGAAAGCTCTAAGACT
TTCTATACTATCCAGgggcattttcttgaaatttttaagTACTTCGCCGA
GACAGTTGGCGATATATCGCGGCTTTTGAATGAGCTCTGCATGAGCTATC
TTAATTAGAAGCTCATTGATATTTTCAGTTGATGGCATCGTTTTACAGTT
ATAATCGTCGAGTATTTCCACGAGGCCATCTTTGATGTCATCGAAATCTT
CCCTTCCAATCTTTTCCATCACCTCCTTTTCATCAAGAGctacaaaattt
ttgaacgatgACAATAGATCTTCTGGTGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024066XLOC_024066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039779-exon-sc0002197-1491911889:26013..26773TCONS_00039779-exon-sc0002197-1491911889:26013..26773Clytia hemisphaericaexon
TCONS_00039779-exon-sc0002197-1510915933:26013..26773TCONS_00039779-exon-sc0002197-1510915933:26013..26773Clytia hemisphaericaexon
TCONS_00039779-exon-sc0002197-1575043694:26013..26773TCONS_00039779-exon-sc0002197-1575043694:26013..26773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039779-proteinTCONS_00039779-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002197supercontigsc0002197:26013..26773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.835527	0.626746	0	0	0.52004	0.136981	0.0826309	0.232074	0.0541602	0.335431	0.130231	0.214022	0.213724	0.355127	0.255467	0.274156	0.385986	0.543981	1.02483	1.50137	0.497129	0.181862	0.368461	0.133994	0.0690052	0	0.264386	0.28216	0.0713361	0.0726802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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