TCONS_00039778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039778
Unique NameTCONS_00039778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039778 ID=TCONS_00039778|Name=TCONS_00039778|organism=Clytia hemisphaerica|type=transcript|length=400bp
ttcaaataaaagagactGTAAACTAAGAATCTTAGAAAAATCTCTAAGAA
TCCTAGAAATTCAGTCTCTCGCAggatcaattttcaaactttggctcgga
catacccatcATCTAGTACCCCTCGTCCTTGGAAAATTCTCCCAAGCCTG
AtatattgtgttttttttctggcaGAGCCCAATCATTTATAATATACAGC
TTttagagaagaaaaaattatctATTTAAAAAGCTCAACCATACAAATTT
AGTTATCATCATATAAATATATGGTATTTTAATTCACATAAGCTAAGAAA
ACTGCATCTGCATAGTTAAACAGTATTGAAATATTCTGCAACGTTGTATT
TTTTCACAATACTTTAAAAAGGTGTGttgctacatgtttttttataagca
Run BLAST on NCBI

transcript from alignment at sc0002197:8358..8757

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039778 ID=TCONS_00039778|Name=TCONS_00039778|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0002197:8358..8757 (Clytia hemisphaerica)
tgcttataaaaaaacatgtagcaaCACACCTTTTTAAAGTATTGTGAAAA
AATACAACGTTGCAGAATATTTCAATACTGTTTAACTATGCAGATGCAGT
TTTCTTAGCTTATGTGAATTAAAATACCATATATTTATATGATGATAACT
AAATTTGTATGGTTGAGCTTTTTAAATagataattttttcttctctaaAA
GCTGTATATTATAAATGATTGGGCTCtgccagaaaaaaaacacaatataT
CAGGCTTGGGAGAATTTTCCAAGGACGAGGGGTACTAGATgatgggtatg
tccgagccaaagtttgaaaattgatccTGCGAGAGACTGAATTTCTAGGA
TTCTTAGAGATTTTTCTAAGATTCTTAGTTTACagtctcttttatttgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024065XLOC_024065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039778-exon-sc0002197-1491911889:8358..8757TCONS_00039778-exon-sc0002197-1491911889:8358..8757Clytia hemisphaericaexon
TCONS_00039778-exon-sc0002197-1510915933:8358..8757TCONS_00039778-exon-sc0002197-1510915933:8358..8757Clytia hemisphaericaexon
TCONS_00039778-exon-sc0002197-1575043694:8358..8757TCONS_00039778-exon-sc0002197-1575043694:8358..8757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002197supercontigsc0002197:8358..8757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56371	1.37792	0.525829	0.417263	1.61121	1.25475	1.33655	1.82402	5.81014	7.44257	5.22576	6.84245	1.05154	3.37727	1.45574	1.24508	1.44015	2.11472	4.06081	1.74789	1.54355	1.22232	1.09235	0.825246	0	0	3.6557	3.8022	1.61074	0.762843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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