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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039776 ID=TCONS_00039776|Name=TCONS_00039776|organism=Clytia hemisphaerica|type=transcript|length=998bp
TTGAATTTGGCAATGTCTACTTCATTTCTTTCCAAAACTTCTACCGCACA
AAGCCTGTATTGATCATTACAAACACACTCCATGTCCCTGGCCTCTCTCA
AGATCTGCATCCTACTCATTTTCTTTCTATCTGCCTTTCGCTTTGAATCT
TTGACGCCCCAAGCTGTCTTTATCAATTCTTTCTTCTTCGTAGCGCTCTG
TCTCAGCACAAAACTCAAAAGATCACTTTTACCTTCATCATACTGAAGCC
TGGCTTCCAATAATAGATCGTCCTCAGTTTTAATATCACGCCTAGTTATA
ATTTCATAAACCGATATCTCATCTAACTTGACCTTTTCTCTCCTACCTCT
CTTTGCTGGTGAATCTTCTCCGCTATCATCATTTTCCCCCTCACTCATTT
GCCTGCTGTTATTCATTCTGCTCTCTGTCGCCTTACCTGTACGGGgccta
tttaaaagatatgggtGATTGTCTGAAACTACATAGTCTTCGTCTTCCTT
TTTAATGTACTCATAGCACGTGTGAAACTCCCTGAAATGACACTTTAACC
CCGGGTAGGCCTCCTCCActccatttttcttttccacCTAACGAGTGCGC
TGCATCAATTTTAACGCCAGGTGATAGTGGGGGTTACCGTCTTCATGCAA
TTCCTTACAACAAGCCCAATGATTGACAGCTTTCGGTCCGCCAAATGCGT
TTACCCAAATTTCAGCGAATGACTCCCGCGTTGGCACAATCGATAAGTCC
GCTTGGCTGTAGGTGATCAAATATGTCTGTCTTCGGGATTCCTTACCACT
ATTACTGTTACGCTTCTTTCCTTTACCATTTTTAGTTGCCATATTATTCA
ATTTACTTTTTAAAACTGTAAATATAACAAAAGACATTATTTAGAACATA
TATTCATGTACTTTAGGATATTTTTAGGCTTcatacaaattttattttat
gttctgTCAGTATTTTTATGCCCATAGTGAGTGGGATCGGGGTGGGCT Run BLAST on NCBI protein sequence of TCONS_00039776-protein >TCONS_00039776-protein ID=TCONS_00039776-protein|Name=TCONS_00039776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MNNSRQMSEGENDDSGEDSPAKRGRREKVKLDEISVYEIITRRDIKTEDD
LLLEARLQYDEGKSDLLSFVLRQSATKKKELIKTAWGVKDSKRKADRKKM
SRMQILREARDMECVCNDQYRLCAVEVLERNEVDIAKF Run BLAST on NCBI transcript from alignment at sc0002196:4327..5324 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039776 ID=TCONS_00039776|Name=TCONS_00039776|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0002196:4327..5324 (Clytia hemisphaerica)
AGCCCACCCCGATCCCACTCACTATGGGCATAAAAATACTGAcagaacat
aaaataaaatttgtatgAAGCCTAAAAATATCCTAAAGTACATGAATATA
TGTTCTAAATAATGTCTTTTGTTATATTTACAGTTTTAAAAAGTAAATTG
AATAATATGGCAACTAAAAATGGTAAAGGAAAGAAGCGTAACAGTAATAG
TGGTAAGGAATCCCGAAGACAGACATATTTGATCACCTACAGCCAAGCGG
ACTTATCGATTGTGCCAACGCGGGAGTCATTCGCTGAAATTTGGGTAAAC
GCATTTGGCGGACCGAAAGCTGTCAATCATTGGGCTTGTTGTAAGGAATT
GCATGAAGACGGTAACCCCCACTATCACCTGGCGTTAAAATTGATGCAGC
GCACTCGTTAGgtggaaaagaaaaatggagTGGAGGAGGCCTACCCGGGG
TTAAAGTGTCATTTCAGGGAGTTTCACACGTGCTATGAGTACATTAAAAA
GGAAGACGAAGACTATGTAGTTTCAGACAATCacccatatcttttaaata
ggcCCCGTACAGGTAAGGCGACAGAGAGCAGAATGAATAACAGCAGGCAA
ATGAGTGAGGGGGAAAATGATGATAGCGGAGAAGATTCACCAGCAAAGAG
AGGTAGGAGAGAAAAGGTCAAGTTAGATGAGATATCGGTTTATGAAATTA
TAACTAGGCGTGATATTAAAACTGAGGACGATCTATTATTGGAAGCCAGG
CTTCAGTATGATGAAGGTAAAAGTGATCTTTTGAGTTTTGTGCTGAGACA
GAGCGCTACGAAGAAGAAAGAATTGATAAAGACAGCTTGGGGCGTCAAAG
ATTCAAAGCGAAAGGCAGATAGAAAGAAAATGAGTAGGATGCAGATCTTG
AGAGAGGCCAGGGACATGGAGTGTGTTTGTAATGATCAATACAGGCTTTG
TGCGGTAGAAGTTTTGGAAAGAAATGAAGTAGACATTGCCAAATTCAA Coding sequence (CDS) from alignment at sc0002196:4327..5324 >TCONS_00039776 ID=TCONS_00039776|Name=TCONS_00039776|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0002196:4327..5324 (Clytia hemisphaerica)
ATGAATAACAGCAGGCAAATGAGTGAGGGGGAAAATGATGATAGCGGAGA
AGATTCACCAGCAAAGAGAGGTAGGAGAGAAAAGGTCAAGTTAGATGAGA
TATCGGTTTATGAAATTATAACTAGGCGTGATATTAAAACTGAGGACGAT
CTATTATTGGAAGCCAGGCTTCAGTATGATGAAGGTAAAAGTGATCTTTT
GAGTTTTGTGCTGAGACAGAGCGCTACGAAGAAGAAAGAATTGATAAAGA
CAGCTTGGGGCGTCAAAGATTCAAAGCGAAAGGCAGATAGAAAGAAAATG
AGTAGGATGCAGATCTTGAGAGAGGCCAGGGACATGGAGTGTGTTTGTAA
TGATCAATACAGGCTTTGTGCGGTAGAAGTTTTGGAAAGAAATGAAGTAG
ACATTGCCAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039776-exon-sc0002196-1491911889:4327..5324 | TCONS_00039776-exon-sc0002196-1491911889:4327..5324 | Clytia hemisphaerica | exon |
| TCONS_00039776-exon-sc0002196-1510915933:4327..5324 | TCONS_00039776-exon-sc0002196-1510915933:4327..5324 | Clytia hemisphaerica | exon |
| TCONS_00039776-exon-sc0002196-1575043694:4327..5324 | TCONS_00039776-exon-sc0002196-1575043694:4327..5324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002196 | supercontig | sc0002196:4327..5324 . |
Blast
The following BLAST results are available for this feature:
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