TCONS_00039769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039769
Unique NameTCONS_00039769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039769 ID=TCONS_00039769|Name=TCONS_00039769|organism=Clytia hemisphaerica|type=transcript|length=421bp
CAGCAAATGGTAAAGAATGCTTCACATGTAGTGGGAAGAACCATTTTGCC
AGAACTCCAATTTGTCCTGGAAAGAAGACGGTCACAAGAATCAACGCAGA
TTACTTTACAACATTGAAGCGAAATGACTCGAACCAAGAACCTACTACAC
TCACTGCCATAAAGAAGGTGACTAAGCCAGCAGACAAATGGGTCAATGTC
AAGATAGGCGACACAAAACACACCCTCTTCGCAGACACAGGTAGCCAGCA
CACCATCATCACACCTGAACACTACAGCAGCGCCATGGGGCCCCTGGAAG
AGCCGGGCATCATACTCAGGCATGGGGATCTTCAAACAATCTCAACATCA
CCGGAATGGTTCACACTGTGATCGAGAACGCCAAAGGAAGCAAGATCAAT
AGCAAAGTATATGTTGTGGNN
Run BLAST on NCBI

protein sequence of TCONS_00039769-protein

>TCONS_00039769-protein ID=TCONS_00039769-protein|Name=TCONS_00039769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
ANGKECFTCSGKNHFARTPICPGKKTVTRINADYFTTLKRNDSNQEPTTL
TAIKKVTKPADKWVNVKIGDTKHTLFADTGSQHTIITPEHYSSAMGPLEE
PGIILRHGDLQTISTSPEWFTL
Run BLAST on NCBI

transcript from alignment at sc0002192:3266..3686

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039769 ID=TCONS_00039769|Name=TCONS_00039769|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0002192:3266..3686 (Clytia hemisphaerica)
NNCCACAACATATACTTTGCTATTGATCTTGCTTCCTTTGGCGTTCTCGA
TCACAGTGTGAACCATTCCGGTGATGTTGAGATTGTTTGAAGATCCCCAT
GCCTGAGTATGATGCCCGGCTCTTCCAGGGGCCCCATGGCGCTGCTGTAG
TGTTCAGGTGTGATGATGGTGTGCTGGCTACCTGTGTCTGCGAAGAGGGT
GTGTTTTGTGTCGCCTATCTTGACATTGACCCATTTGTCTGCTGGCTTAG
TCACCTTCTTTATGGCAGTGAGTGTAGTAGGTTCTTGGTTCGAGTCATTT
CGCTTCAATGTTGTAAAGTAATCTGCGTTGATTCTTGTGACCGTCTTCTT
TCCAGGACAAATTGGAGTTCTGGCAAAATGGTTCTTCCCACTACATGTGA
AGCATTCTTTACCATTTGCTG

Coding sequence (CDS) from alignment at sc0002192:3266..3686

>TCONS_00039769 ID=TCONS_00039769|Name=TCONS_00039769|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0002192:3266..3686 (Clytia hemisphaerica)
TCACAGTGTGAACCATTCCGGTGATGTTGAGATTGTTTGAAGATCCCCAT
GCCTGAGTATGATGCCCGGCTCTTCCAGGGGCCCCATGGCGCTGCTGTAG
TGTTCAGGTGTGATGATGGTGTGCTGGCTACCTGTGTCTGCGAAGAGGGT
GTGTTTTGTGTCGCCTATCTTGACATTGACCCATTTGTCTGCTGGCTTAG
TCACCTTCTTTATGGCAGTGAGTGTAGTAGGTTCTTGGTTCGAGTCATTT
CGCTTCAATGTTGTAAAGTAATCTGCGTTGATTCTTGTGACCGTCTTCTT
TCCAGGACAAATTGGAGTTCTGGCAAAATGGTTCTTCCCACTACATGTGA
AGCATTCTTTACCATTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024056XLOC_024056Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039769-proteinTCONS_00039769-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039769-exon-sc0002192-1491911889:3266..3686TCONS_00039769-exon-sc0002192-1491911889:3266..3686Clytia hemisphaericaexon
TCONS_00039769-exon-sc0002192-1510915933:3266..3686TCONS_00039769-exon-sc0002192-1510915933:3266..3686Clytia hemisphaericaexon
TCONS_00039769-exon-sc0002192-1575043694:3266..3686TCONS_00039769-exon-sc0002192-1575043694:3266..3686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002192supercontigsc0002192:3266..3686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.789351	0.249297	1.24977	0.864848	0.871722	0	0.873572	2.39455	1.51338	1.72599	2.14008	1.46018	2.58425	1.28575	0.615447	1.39611	1.00215	0.996364	0.621093	1.25968	1.55807	2.1972	0.538947	0.952433	2.93935	3.35316	0.848685	1.03945	0	0.282688
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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