TCONS_00039763 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039763
Unique Name	TCONS_00039763
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1670

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002192:22632..28762-

transcript sequence

>TCONS_00039763 ID=TCONS_00039763|Name=TCONS_00039763|organism=Clytia hemisphaerica|type=transcript|length=1670bp
AATTGGCCGAACAACCTGACGTCATTACTGGTCGCCTGTTAAAGGCATTG
GTGCAAACACTGTTCGGTGGACCTCCAACTAATGACCAACCCCTACAACA
AGATGAGGACgatgtatttcccaagcaatCTTCGCAAGCACCGCCATCAT
CATcacaacaaaacaataaaacacaCCCACGTGTTGTTGCTAGAGTACTC
TCCATCGCAGGGTACATTGCACTCATGCATCTCTATCACTTGGACGTCAG
CATATTAAGTGAGTTGAAGCGACGTCACAACATTCAAGAAGAAGAGAAGG
AGAGAAAAGGAAAGAAGAACGGCAAAACGCCAGGTGGCAGTCGAAGGAAA
AGCGGTGCTCGTGATAGCAGCATACATAAGGATTCAGGCCTTGATGATGA
GATGGGCGTTGGAGGGGCGGCCGCAGAAGATGCAGAGGCGGAATATATTC
GTAAGAtctgcgaaagagaaatcgtcaCTGGTGACAACCTATTGAGTGTA
TTTGCTCCAGTTGCAGTGATGATTTGCAAAAACCCGTCAGCTTACAAAAA
TACTGAATTACGATCCAGCGCTGCTTTGGCTTTGTCCAGATTTATGATGG
TCAGTTCTGAATTTTGTGATCAGCATTTGCAACTTGTTTTCACCATATTG
GAAAAGTCTGAATTTGCGATCGTGCGTTCCAACATGATGATCACTTTGGG
CGATCTGTGTTTCCGCTTTCCCAACCTCATCGAACCATGGACACCAAATC
TCTATGCAAGacTTCGTGATGAATCAGTGGAAGTGCGCAAGACAGCTGTC
ACCATACTAACACATCTCATTTTGAACGATAtgttgaaagtcaaaggact
aATCAGTGAAATGGCCATCTGCTTGGAAGATAAAGAAGACAAAATCGCTT
CTTCGGCTAAAAGCTTATTCGCTGAACTGGCTAGAAAGGGCAATGCATTG
TACAACATAGCACCGGACATCATCAGTCGTCTCTCAGATCCGGACACTGG
TGTCGATGAAAGTGTCTTCCGGATCATCATGAAATACATATTGCAGTTCA
TTCAGAAGGATAAGCAAGCGGAATCTCTGGTGGAGAAGCTGTGTCATCGA
TTTAGAGCTACAAGAACGGATCGTCAATGGCGCGACTTATCATTTTGTTT
ATCGCTCTTACCATACACTGAGAAAACGTTGAAGAAGCTGATGGAGAACA
TTCGTTGTTACCATGACAAACTATCTGATGACGATGTCTATTCATGTTTC
ACTACAATCATTAGCAAGTCAAAGAAATTCTCCAAACAAGAGTTCAAGaC
ACTAGTGGAAGAGTTCGAAAGCACCATAGAAGGATACCATAATAAAGGTG
TTGAAGAAAATGCTGATTTCGATAAAGCTGCAAAAGTTCTCTCTCAAGCT
GCTACACAAGAAAACACGACGAAAAATCGGAAGAAGTCGACTCGCACCGC
ACGAAAACCAAAACCGTGGGAAGTGGACGACAGTGAGGAAGACGTAGAAA
CGAACGACAACGAACCACCCAAACACCCTTCCCGAAAATCCACCAGAAAC
GTCACCAAGAAAACCACCAAAGATAAGAGCGATGACGATTTCTCAGACAA
AGAAAATCGGAAAGCCTTACCGGGTGGCAAACGAAAAACAACGGAAAAGA
AACGAAAAACGGTTCGGTNN

Run BLAST on NCBI

transcript from alignment at sc0002192:22632..28762-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039763 ID=TCONS_00039763|Name=TCONS_00039763|organism=Clytia hemisphaerica|type=transcript|length=6131bp|location=Sequence derived from alignment at sc0002192:22632..28762- (Clytia hemisphaerica)
AATTGGCCGAACAACCTGACGTCATTACTGGTCGCCTGTTAAAGGCATTG
GTGCAAACACTGTTCGGTGGACCTCCAACTAATGACCAACCCCTACAACA
AGGTATTTTTCAACCTATTCATCTCTTGGCTCTTTCTGTCGGTTTAGTTT
TCATTTGGATTACCGCAATACTTAGACCTAGGAGACTAAAAAATCGATGG
GGGGCCAAGTTTAACGGGAAGTCTACCGGGTGCATCATAAATAAGTATAC
AGGTTTGTTAAATTATTGTTAGTTTATGTTTATTCATTTTTTATTGTACA
AAAGAAAGCCTCACTTAAATTCTTGTGTATAAAACTTCCTTACAATAAAT
AATGAATCAACAGAAAATTCTTATCCGTAAACTAATGATCATTTAACAAA
CCTGTATACTTATTTATGGTGTACCTGGTACAGCCCCATGCGGACCCATA
TATTTACCACAATTTTACTACGGCCTTATAACTTCACTTTATAGATGAGG
ACGATGTATTTCCCAAGCAATCTTCGCAAGCACCGCCATCATCATCACAA
CAAAACAATAAAACACACCCACGTGTTGTTGCTAGAGTACTCTCCATCGC
AGGGTACATTGCACTCATGCATCTCTATCACTTGGACGTCAGCATATTAA
GTGAGTTGAAGCGACGTCACAACATTCAAGAAGAANTCACTTGGACGTCA
GCATATTAAGTGAGTTGAAGCGACGTCACAACATTCAAGAAGAAGAGAAG
GAGAGAAAAGGAAAGAAGAACGGCAAAACGCCAGGTGGCAGTCGAAGGAA
AAGCGGTGCTCGTGATAGCAGCATACATAAGGTAGTGTAAAGCTTAAAGT
TGATATTTTGGCTTTTTTGGACCTACCTGAGGTCCTATAAATTAACCCGC
TCGTTAGTTCGTTCCTTTGTTCGTTACCAGCTTTTCTCGAGATTGGCTCT
TTTGATTTTTTTGCATAAAAGTAGGGTACCGTCATTGGTAAAAGATAGCT
CAAGCAGATTTTCAACAAAAAAAATCTTGTTTCAAAAAACGAACCTTTAT
CTATAAGAAACACTATTTATATACATACATTAATGTTCTTGGCCAAATTA
CTCAATCTTTTGATGAGGTAGATATTCTCTTCCTTCCAAGCGCCTCCCTT
AATACCATCCAATGGACAAGGGGACAATCAATGATGAAAATAAGCGACGA
ATTTCAATAAATCGTCACTATTTGTGTTCTGATTGATTGTTTTAACGGTC
ACGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGTAG
GTCCATAAAAGTCTTTTATCTTCTTTTCTCTCTATTTAGATCGTCTGTTT
TTGTTGTACCTAAAACAGCAAAGACTTTTTATAGCTCAATCTAAAAAAAT
ATCTTAATTTCAAATTGACAGGATTCAGGCCTTGATGATGAGATGGGCGT
TGGAGGGGCGGCCGCAGAAGATGCAGAGGCGGAATATATTCGTAAGATCT
GCGAAAGAGAAATCGTCACTGGTATGAATGTTATCTGATTTCTTCAAAAT
TGAAATTGAAATTTGAAATTTGATTATTGCTGGGAAGTTACTTTTTTGAC
AAAATAATGCTTTAGGAAAAATGTACAGTCAGTCACTTTAATTGGGTTAA
TTTTCGGGAGATTTAATTTCGCGAGCCAAAAAGTCGCAAGTTTCTGGATT
TGTTTTCGCCAGCCAATGTTTTGAAAAATTTCGTGTTGATTTAATTTTGC
GAATGAGTTTTTAAGCAGCTGAAAATGGCCTTAAAGGTGGCAAAATGGAA
CAATTTAGACGATTTTTGCATCGAAAATATGATTTAAATAAACGATAAGT
AAGTATTTAGTCATGGCGTTCTAAATTACTAATTTAGAACGCCATGTATT
TAGTCCATAAACAGCCAGTAAGATTACTTGCTGCTTCACTGGAGGAGATT
AAAGAGTCGATCGTTGTTTTAGGTGACAACCTATTGAGTGTATTTGCTCC
AGTTGCAGTGATGATTTGCAAAAACCCGTCAGCTTACAAAAATANAAAAT
AAGCGACGAATTTCAATAAATCGTCACTATTTGTGTTCTGATTGATTGTT
TTAACGGTCACGCTCACGTAGATATCAATTATATATGTGTTAAATGCATA
ACCAGGTAGGTCCATAAAAGTCTTTTATCTTCTTTTCTCTCTATTTAGAT
CGTCTGTTTTTGTTGTACCTAAAACAGCAAAGACTTTTTATAGCTCAATC
TAAAAAAATATCTTAATTTCAAATTGACAGGATTCAGGCCTTGATGATGA
GATGGGCGTTGGAGGGGCGGCCGCAGAAGATGCAGAGGCGGAATATATTC
GTAAGATCTGCGAAAGAGAAATCGTCACTGGTATGAATGTTATCTGATTT
CTTCAAAATTGAAATTGAAATTTGAAATTTGATTATTGCTGGGAAGTTAC
TTTTTTGACAAAATAATGCTTTAGGAAAAATGTACAGTCAGTCACTTTAA
TTGGGTTAATTTTCGGGAGATTTAATTTCGCGAGCCAAAAAGTCGCAAGT
TTCTGGATTTGTTTTCGCCAGCCAATGTTTTGAAAAATTTCGTGTTGATT
TAATTTTGCGAATGAGTTTTTAAGCAGCTGAAAATGGCCTTAAAGGTGGC
AAAATGGAACAATTTAGACGATTTTTGCATCGAAAATATGATTTAAATAA
ACGATAAGTAAGTATTTAGTCATGGCGTTCTAAATTACTAATTTAGAACG
CCATGTATTTAGTCCATAAACAGCCAGTAAGATTACTTGCTGCTTCACTG
GAGGAGATTAAAGAGTCGATCGTTGTTTTAGGTGACAACCTATTGAGTGT
ATTTGCTCCAGTTGCAGTGATGATTTGCAAAAACCCGTCAGCTTACAAAA
ATACTGAATTACGATCCAGCGCTGCTTTGGCTTTGTCCAGATTTATGATG
GTCAGGTATAGATTGCTTTTGTACTGCTGCTCATCTTTTGATTAATTGCC
CCCACTGGAACCTTCTTCGAAAAAATAGTTTTATATTTTGCGTGCTAGAT
ATTTCAGCTATATTTTGGTTCTCATATTTGTTGTGACAAAGCATGATACT
AACTTGATTTTGGGTATTTTCTTACACTTAGTTCTGAATTTTGTGATCAG
CATTTGCAACTTGTTTTCACCATATTGGAAAAGGTTCGTAGTTTTACCAT
AAAACATAATAATTCAAAAACATGTTTTCTGTGTAGTACGGTTTTTATCA
ACTTTCCCGAGTGGATTATTTTTAGAAGGCCATACAGAAGAGTTAGAGCT
AAAGAAGGAATTTTGAACAATATCTTTTTAAGTTAATTTTACCTCGTAGA
AATCTCGAAAAGAATAATTAATATATAGATTGGAAACGCCCGAAAGAAAC
TTTTTGCATTATATCTGTTTCATTCAGTCTGAATTTGCGATCGTGCGTTC
CAACATGATGATCACTTTGGGCGATCTGTGTTTCCGCTTTCCCAACCTCA
TCGAACCATGGACACCAAATCTCTATGCAAGGTAATCGCACCTTACATTT
CTACTGAGCAACCGGCTGTATCTAAGAAAATGAGAAAATATTAGAGATTA
TCCGTGAAACCAAATTCGGCATTAAAAAAATGTCACCGTGTTTCTAGGCT
TTATTCAATTTACTGATGGACATCAGATAATATGTTTATCCGGCGCCATC
AGTAAGCATCGAAAAGTTGAACAATATGCGGCGAACGAGGTTGAAAACCA
ATGTATTCTTACCTTGGCTGACCTTTGAATTTGACAAATATTTTACGAGC
CTGGTGATCAACACCCGGTATGTTTTCTTGAGAAAAAAAAACGATAGTCG
AAAGACGAAACGAAGCCGATGAAAGACTATATCCACTAGCACTAGACGTA
CAACTAGAAGTTTTTTTGTTTTTTCAGACTTCGTGATGAATCAGTGGAAG
TGCGCAAGACAGCTGTCACCATACTAACACATCTCATTTTGAACGATATG
TTGAAAGTCAAAGGACTAATCAGTGAAATGGCCATCTGCTTGGAAGATAA
AGAAGACAAAATCGCTTCTTCGGCTAAAAGCTTATTCGCTGAACTGGCTA
GAAAGGTACTTATATCTTTGTAATCGCAAAAGTTAACATTTCTCTTCGTA
TTTTCATTTCAAATCTGCATCTATCTCCTCAACCTTTTCTCCACCAGAGT
TTATTTGATCATCAATTTAAAAGAATTGGCCTAAAAACATTTCTTTTTCA
GGGCAATGCATTGTACAACATAGCACCGGACATCATCAGTCGTCTCTCAG
ATCCGGACACTGGTGTCGATGAAAGTGTCTTCCGGATCATCATGAAGTAA
GCCCTCCTCTACATCTAGCCATAGATTCAATTCATAACTTTACTACAAGC
CAGGTGATAATCTTACACAAAAATTTTTCAGCTGCAGTCTATAACAAAGA
AATCTTCGCAGGTAATAATTCTCTTCTCCAACAGATACATATTGCAGTTC
ATTCAGAAGGATAAGCAAGCGGAATCTCTGGTGGAGAAGCTGTGTCATCG
ATTTAGAGCTACAAGGTTTTACTTTTTTTTAATTTGAGGATACTTTCAAG
TTTCAAGTTTCACGTTCAGCTTAGGAGCCAATTCCCTGATAGAGGGGTCC
ACCACGACCCAAGTGAAAATGTCATTGCATCAGGGCAAGGCTAGACAGAA
CTCAACATGTCACCCTTTAGGACATCAAGGGTAATTAATGTGCAAATGTG
TTAGCTTCGTCTCACTGTAGCTCACGCCGGAGTAATAAACAGCTTTCTGG
ATTGATTAAAAACTATGGCATACTGTAGCCAAGTGAATTGAGATTAGTCG
ATTGCTACCCGATTCAAAATCAAGATTCTTCCATCAGTGATTACTGAGTT
TTTTCCATGCTAATTTCTTCCTAGAACGGATCGTCAATGGCGCGACTTAT
CATTTTGTTTATCGCTCTTACCATACACTGAGAAAACGTTGAAGAAGCTG
ATGGAGAACATTCGTTGTTACCATGACAAACTATCTGATGACGATGTCTA
TTCATGTTTCACTACAATCATTAGCAAGTCAAAGAAATTCTCCAAACAAG
AGTTCAAGGTATTTCTCTCAAATCATGCCGTCAAATTTAGCACTTTTTTC
TCATTTTTTTCGACTGATTTTCACGGTCACAAATTACGAAACCCTAACCC
TTCTAATAATTTCTTGCTTACCTGGCTTAGAAAGCTATATTGATCTTGAA
TATAATGGAATATTTTCTTCCTTTCAGACACTAGTGGAAGAGTTCGAAAG
CACCATAGAAGGATACCATAATAAAGGTGTTGAAGAAAATGCTGATTTCG
ATAAAGCTGCAAAAGTTCTCTCTCAAGCTGCTACACAAGGTAAATCGAAT
TTCAAAAGTTCTTGAAGAAGAAAAGCAGAGCACCATGCTTGTATTCCTAG
TGGTTCATGGTTTGAATATTTGACTGAAGACTGCAATGGCAATTTCCTTA
TTCTGTTCGTTATCCATTGGAAACAGTATACTTCATTAGGGCAATGAACT
GTTATCAGATATAATCTTACTTTGGCTGCTTCATCGTCTATTCAGATTCC
TTTTGTTAAAAGTGATTATTGGTCGTAAAAACAGTTTCTCAAAATCCGAA
GTGATATTTTCACTACATTTGGTCTACATTTGGCGAAATTTTTGAATTTG
TGAATTGAGCTTTTCGAAGTATTTCGCTCTAAAAACTTTTGCGATTTATT
GAATGATTTGTTTTTAAAGTAGGTTGTTTCTTTTTTGCAAACCTTCAGAT
AATTCAGCAACTTCTTTATAATAAATTTCTTTTTTATAAAAATTACGTTA
TTTCTAACTTGTCTTACTTAGAAAACACGACGAAAAATCGGAAGAAGTCG
ACTCGCACCGCACGAAAACCAAAACCGTGGGAAGTGGACGACAGTGAGGA
AGACGTAGAAACGAACGACAACGAACCACCCAAACACCCTTCCCGAAAAT
CCACCAGAAACGTCACCAAGAAAACCACCAAAGATAAGAGCGATGACGAT
TTCTCAGACAAAGAAAATCGGAAAGCCTTACCGGGTGGCAAACGAAAAAC
AACGGAAAAGAAACGAAAAACGGTTCGGTNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024052	XLOC_024052	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002192	supercontig	sc0002192:22632..28762 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.52204	7.06525	3.47103	2.82432	20.1228	17.7241	12.5541	19.6078	13.8501	6.78876	12.2232	12.9677	6.83626	6.85797	3.34275	3.78032	7.64499	5.68883	1.62858	1.78299	3.79366	3.51019	6.3765	6.11416	13.0851	14.6145	1.99286	1.31813	3.76091	4.90544

Blast

[Close]

BLAST of TCONS_00039763 vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 356.681 bits (914), Expect = 1.345e-108
Identity = 184/409 (44.99%), Postives = 275/409 (67.24%), Query Frame = 3

Query:  183 VVARVLSIAGYIALMHLYHLDVSILSELKRRHNIQXXXXXXXXXXXXXTPGGSRRKSGARDSSIHKDSGLXXXXXXXXXXXXXXXXXYIRKICEREIVTGDNLLSVFAPVAVMICKNPSAYKNTELRSSAALALSRFMMVSSEFCDQHLQLVFTILEKSEFAIVRSNMMITLGDLCFRFPNLIEPWTPNLYARLRDESVEVRKTAVTILTHLILNDMLKVKGLISEMAICLEDKEDKIASSAKSLFAELARKGNALYNIAPDIISRLSDPDTGVDESVFRIIMKYILQFIQKDKQAESLVEKLCHRFRATRTDRQWRDLSFCLSLLPYTEKTLKKLMENIRCYHDKLSDDDVYSCXXXXXXXXXXXXXXXXXXLVEEFESTIEGYHNKGVEENADFDKAAKVLSQAATQ 1409
            ++  +LS+AG +AL  L HL+ ++  EL RR  ++EE++ +            + K+ + ++++ ++ GL         A        IR ICE E++ G   L+ F P+ + +C NP  Y N +L ++A+LAL +F M+S+ FCD  L+L+FT+LEKS   IVRSN+M+  GDL  RFPNL++PWTP+LYARLRD + +VRKTA  ++THLIL DM+KVKG +SEMA+ L D E +IA+ AK+ F EL+ KGNA+YN+ PDIISRLSDP+ GV+E  F  IMK +L +I KDKQ ESLVEKLC RFR +RT+RQ RDL++C+S LP TE+ L+K+++N  C+ DKLSD+ ++S F +++ K ++ +K E K +++EFE  +   H +G++   + +     + QA +Q
Sbjct:  922 LLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQEHKTK--------DPKEKNTSSETTMEEELGLVGATADDTEAE------LIRGICEMELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELE-----IGQAGSQ 1311

The following BLAST results are available for this feature:

BLAST of TCONS_00039763 vs. Swiss-Prot (Human)

BLAST of TCONS_00039763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND1	1.345e-108	44.99	Condensin complex subunit 1 OS=Homo sapiens GN=NCA...	[more]

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TCONS_00039763 (transcript) - C. hemisphaerica