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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039760 ID=TCONS_00039760|Name=TCONS_00039760|organism=Clytia hemisphaerica|type=transcript|length=2134bp
attatttttgtaagtaagtgtcactatgtcaaaataggttgttattctgt
tcaattgttattttataatatctaaatagcatgtattacttttttgtaat
ttaatgcgctatgtattgatgttatgttatgtatatattatgatcttatt
tttttttccggtctgcactttgttgacctgtgacctgcgacctgtgacct
gcgttttacactaaccgtaaTTTCcttcctagattttgtaatttcccgca
aaagtacAATTTCCATTTCTTGGAAATTCATCCaatcttgttttttaaat
ttctcaaacTTAGGGCCCCCtacaatattttttcattagGGGTCCCCTAA
ATtctaggggtcacctaaattctCAGGGGCCACCTAGCACCTGCTTATAA
GCGATGGAAACCAATTCCTGCCTAGAATCTTACTCACAATAAATTGACAC
ATACGTTTGTTTCGTTGAAAGGCATTGTCTTGTGGTTCCGGTTAGCAGTG
GTTACATGTTACTAGTAAATATAGTACAAATAATAATGATTTCTAATAAC
TAGTTGATTTATCACTTATTATGGGCTATTCTCCTAATAGCCGTGCAATT
GTCACTTGTCTATCTGTCTGTCTTACTCTTGGCACATAGCCGGCAAAGCG
TCTGTGTCTTGGCATATATCAACCGCCAAGTTTTTGAGCTGATAATAACG
TGGTCGATATTCCTAAGATGTTACGCAATGTTCGATACTGTAAAGGCGGG
TAAAGGGAACAGTGAGTGGTTCCTTCCGGAATGGAGAGTTCTCTTATAAt
cgacttgaaaaatatttatacaaaaatcttttaattccTATGGATGAGGA
CTGATCTTTTGTGATTGTCCTGATGCATAACTCTTGCCCTAAAGAGCAAA
ACAAGGTGTTCTCTGAGGAGCCAACGTAGAGAACGTGCAAGGCAAAACTG
CTGCACCAAACAGAAGTTCCatcCGAGTATAAATATGACAATTTTTATAa
ctaacaaaaatataaaacttctTCTTTTGATGGTCTTGGCCCTTGTTTTA
TTGTATTGATGACATGTTCTTTTACTGCTTTCCGTATCTCGTAAGTCATC
CTTTGTCGCATATTGTCGTAAACAAAAAAGAGATAAAATCAAATATAATT
AAAATGGTTGCAAATATTTGCTAAGTATGCTAACAAGAGTCAAAAGACCG
AGTGATCTGCACACGGCTTGTCAGTCCTTTTGAATAGTCCCAGACTCAAT
GCTTATGCATACGTGAAAAATATGTTTGCATAGGAACGGAAGGAAAACAA
TTCCAAACATCTTCGAACGTCGGAAATTTAAGTGATGTTGATAATTGTGG
ATAAATCTTCAAATGTAACTcaggccaggggggggggttcaggcAGTTGA
TCCAGAACACTATGCCTGTTTTAACCGTGGtggtccattttcaaatttct
ataaggcgagaccaatttgattggttgttttacgggcccgaccgaccctg
aaattccaaacgtcgaaataagaataaaattgattttggtagtacatttt
tattttcatagctTTATAGACtgccaatttttcaaaattttagtagTTTT
Tctaggggggggtttcagggggtacccgattccgtaattccgccaatttt
ttctccaatttccgtcacacAGTctttaaattgaaccaaaattccgtcac
cgaaaattcctttgaaattcaatatttttgtcgaaaattccgcaaatttt
gaaaatcttttaccaattccgaaattccgcgaatttttttgctaaattcc
gtttttccgcactaaaattgtctaattttccgcctccgtcagagaaccca
atttctgtaattccgtctaaattttcgccaaattccgccactccgtccga
aaaaagggccgattccgctcctccgccaaccatGaaaccccccccccttt
ctaaggttttgagaattttatgtttaatttttcattttatccgtGAATTC
gactttttgtgtctttttagtTTCTATTTCGTATTTTTGtctgctgcctt
tttaggaaattttatgggtgaaattctacttttggaTCATCTATTCCAGT
TTTAAAAATTCTTGAGGGCCTTTTTCATTAGCAG Run BLAST on NCBI transcript from alignment at sc0002192:9979..12276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039760 ID=TCONS_00039760|Name=TCONS_00039760|organism=Clytia hemisphaerica|type=transcript|length=2298bp|location=Sequence derived from alignment at sc0002192:9979..12276+ (Clytia hemisphaerica)
attatttttgtaagtaagtgtcactatgtcaaaataggttgttattctgt
tcaattgttattttataatatctaaatagcatgtattacttttttgtaat
ttaatgcgctatgtattgatgttatgttatgtatatattatgatcttatt
tttttttccggtctgcactttgttgacctgtgacctgcgacctgtgacct
gcgttttacactaaccgtaaTTTCcttcctagattttgtaatttcccgca
aaagtacAATTTCCATTTCTTGGAAATTCATCCaatcttgttttttaaat
ttctcaaacTTAGGGCCCCCtacaatattttttcattagGGGTCCCCTAA
ATtctaggggtcacctaaattctCAGGGGCCACCTAGCACCTGCTTATAA
GCGATGGAAACCAATTCCTGCCTAGAATCTTACTCACAATAAATTGACAC
ATACGTTTGTTTCGTTGAAAGGCATTGTCTTGTGGTTCCGGTTAGCAGTG
GTTACATGTTACTAGTAAATATAGTACAAATAATAATGATTTCTAATAAC
TAGTTGATTTATCACTTATTATGGGCTATTCTCCTAATAGCCGTGCAATT
GTCACTTGTCTATCTGTCTGTCTTACTCTTGGCACATAGCCGGCAAAGCG
TCTGTGTCTTGGCATATATCAACCGCCAAGTTTTTGAGCTGATAATAACG
TGGTCGATATTCCTAAGATGTTACGCAATGTTCGATACTGTAAAGGCGGG
TAAAGGGAACAGTGAGTGGTTCCTTCCGGAATGGAGAGTTCTCTTATAAt
cgacttgaaaaatatttatacaaaaatcttttaattccTATGGATGAGGA
CTGATCTTTTGTGATTGTCCTGATGCATAACTCTTGCCCTAAAGAGCAAA
ACAAGGTGTTCTCTGAGGAGCCAACGTAGAGAACGTGCAAGGCAAAACTG
CTGCACCAAACAGAAGTTCCATCCaagttagactggagtcgtttataatg
cgtataatactaataataccaatactaataataataatacgggatttagt
ttgtataaactaaaatcgttccattcattactttttgctttatttctact
atgtataaattagtcgtctagcttgctagactacatcCGAGTATAAATAT
GACAATTTTTATAactaacaaaaatataaaacttctTCTTTTGATGGTCT
TGGCCCTTGTTTTATTGTATTGATGACATGTTCTTTTACTGCTTTCCGTA
TCTCGTAAGTCATCCTTTGTCGCATATTGTCGTAAACAAAAAAGAGATAA
AATCAAATATAATTAAAATGGTTGCAAATATTTGCTAAGTATGCTAACAA
GAGTCAAAAGACCGAGTGATCTGCACACGGCTTGTCAGTCCTTTTGAATA
GTCCCAGACTCAATGCTTATGCATACGTGAAAAATATGTTTGCATAGGAA
CGGAAGGAAAACAATTCCAAACATCTTCGAACGTCGGAAATTTAAGTGAT
GTTGATAATTGTGGATAAATCTTCAAATGTAACTcaggccaggggggggg
gttcaggcAGTTGATCCAGAACACTATGCCTGTTTTAACCGTGGtggtcc
attttcaaatttctataaggcgagaccaatttgattggttgttttacggg
cccgaccgaccctgaaattccaaacgtcgaaataagaataaaattgattt
tggtagtacatttttattttcatagctTTATAGACtgccaatttttcaaa
attttagtagTTTTTctaggggggggtttcagggggtacccgattccgta
attccgccaattttttctccaatttccgtcacacAGTctttaaattgaac
caaaattccgtcaccgaaaattcctttgaaattcaatatttttgtcgaaa
attccgcaaattttgaaaatcttttaccaattccgaaattccgcgaattt
ttttgctaaattccgtttttccgcactaaaattgtctaattttccgcctc
cgtcagagaacccaatttctgtaattccgtctaaattttcgccaaattcc
gccactccgtccgaaaaaagggccgattccgctcctccgccaaccatGaa
acccccccccctttctaaggttttgagaattttatgtttaatttttcatt
ttatccgtGAATTCgactttttgtgtctttttagtTTCTATTTCGTATTT
TTGtctgctgcctttttaggaaattttatgggtgaaattctacttttgga
TCATCTATTCCAGTTTTAAAAATTCTTGAGGGCCTTTTTCATTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039760-exon-sc0002192-1491911889:9979..10948 | TCONS_00039760-exon-sc0002192-1491911889:9979..10948 | Clytia hemisphaerica | exon |
| TCONS_00039760-exon-sc0002192-1510915933:9979..10948 | TCONS_00039760-exon-sc0002192-1510915933:9979..10948 | Clytia hemisphaerica | exon |
| TCONS_00039760-exon-sc0002192-1575043694:9979..10948 | TCONS_00039760-exon-sc0002192-1575043694:9979..10948 | Clytia hemisphaerica | exon |
| TCONS_00039760-exon-sc0002192-1491911889:11113..12276 | TCONS_00039760-exon-sc0002192-1491911889:11113..12276 | Clytia hemisphaerica | exon |
| TCONS_00039760-exon-sc0002192-1510915933:11113..12276 | TCONS_00039760-exon-sc0002192-1510915933:11113..12276 | Clytia hemisphaerica | exon |
| TCONS_00039760-exon-sc0002192-1575043694:11113..12276 | TCONS_00039760-exon-sc0002192-1575043694:11113..12276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002192 | supercontig | sc0002192:9979..12276 + |
Blast
The following BLAST results are available for this feature:
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