TCONS_00039758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039758
Unique NameTCONS_00039758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039758 ID=TCONS_00039758|Name=TCONS_00039758|organism=Clytia hemisphaerica|type=transcript|length=277bp
ATGCTCATGGTTAAGATAAACTTCCAGATAGGAGAGGGCAACTTTTTCAT
TATCACAGCCATAAGTTGTTGCATTGCTTGTGAATTTATGCATTTGCGGA
TAACAAATTTGCATGATCAGACTTTTCGATGGCTGTGATACATTTGAATG
ACAGGCTTGTCTAAATTTGCTTGCAGTAATGACACCAGCACGTGCTTCGA
ACCAAAGGTTTGATTTAGCCTGTTCTCTAGTGTGTTGTTCAATAAGGTTT
ACATCTTCTTCGGTGATGCTCAAAGAG
Run BLAST on NCBI

transcript from alignment at sc0002191:11225..11501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039758 ID=TCONS_00039758|Name=TCONS_00039758|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0002191:11225..11501 (Clytia hemisphaerica)
CTCTTTGAGCATCACCGAAGAAGATGTAAACCTTATTGAACAACACACTA
GAGAACAGGCTAAATCAAACCTTTGGTTCGAAGCACGTGCTGGTGTCATT
ACTGCAAGCAAATTTAGACAAGCCTGTCATTCAAATGTATCACAGCCATC
GAAAAGTCTGATCATGCAAATTTGTTATCCGCAAATGCATAAATTCACAA
GCAATGCAACAACTTATGGCTGTGATAATGAAAAAGTTGCCCTCTCCTAT
CTGGAAGTTTATCTTAACCATGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024047XLOC_024047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039758-exon-sc0002191-1491911889:11225..11501TCONS_00039758-exon-sc0002191-1491911889:11225..11501Clytia hemisphaericaexon
TCONS_00039758-exon-sc0002191-1510915933:11225..11501TCONS_00039758-exon-sc0002191-1510915933:11225..11501Clytia hemisphaericaexon
TCONS_00039758-exon-sc0002191-1575043694:11225..11501TCONS_00039758-exon-sc0002191-1575043694:11225..11501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002191supercontigsc0002191:11225..11501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.169906	4.80201	0.776378	3.30083	4.2285	0.677735	0	2.3757	2.46612	0.618576	5.19329	5.43784	4.47922	5.74072	3.82803	4.42356	6.02934	5.69442	5.80736	5.62092	1.10466	0	13.4144	10.0649	6.27792	12.8238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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