TCONS_00039755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039755
Unique NameTCONS_00039755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039755 ID=TCONS_00039755|Name=TCONS_00039755|organism=Clytia hemisphaerica|type=transcript|length=215bp
CGtcGTCACAAAAACCTCTGATCAACTGTTGCCATACGATTTCCAAAGCA
CACTCAAAAAGAAGAATGCTAATATCCAAGTCTCACCGAACGAACGCGCC
ATGTTGGGTTTATTCTTGGCCAAAATACAACAAATCGACCCCGATGTTCT
TGTGGGTCATGATATACATGGATTTGATCTCGATGTTCTATTGGGAAGAT
TCACAGCCACTAAGG
Run BLAST on NCBI

transcript from alignment at sc0002189:21657..23352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039755 ID=TCONS_00039755|Name=TCONS_00039755|organism=Clytia hemisphaerica|type=transcript|length=1696bp|location=Sequence derived from alignment at sc0002189:21657..23352- (Clytia hemisphaerica)
CGGTAAATGATTCTATATTTGTTTTATCCATACTCGCTTTAAACCTATGA
ATGAATTATTTTCACTGGATTTTTAATCCGATAGTTCCATCATCGGATTA
TAGAGACATTTTTTTCCCGTTCGGTCGTACGGTTTAAATAGTATAGTACG
GTCTATTTGTATAAAAATTGTGCACAAAGGCGCAAAAGCATGGCCATGAA
ACTTTGCAAAATTGTAGTTTAGGGGTCAAAAATGGATTTAAATCTCACCC
AGTCTCACCCAAAAATGTTAATGACTTTCGGCACATCTAGACTGCACCAG
TAGTCTTATTTAAATTAAGTTTTTGTTTATTTTAGTCGTCACAAAAACCT
CTGATCAACTGTTGCCATACGATTTCCAAAGCACACTCAAAAAGAAGGTA
AAACAAACTATTTCTTTGGGAGTCATTTACACGTCTTTCTTTACCCTAGA
TTTTTTCAACATTTCGCCTTAGCAAGCGAATTATTTGTCTCACGTTTATC
GCTTTGTAGTAGACTATGTGCGCATTGTCTGTTTGATAGAAAATTCCCGT
ACGGAGACCTCTGCGATGAAGTATGATTTATAAATAGCGACACTCCTCTC
GTCGTCTCCCCTCTCTTACCAACACCCCATCGCAGCGGTCGGTTCGAAAA
ATCTCAAATGGGAAAAGACAATTACAACAAACTCTTTACGGCAATGGATT
TTGAAATTAGCTGTAGATACTGGGTACACCCAAGCGAGTTATACGCATGT
CCAAAATCAACCCCCGGATTTCTTTCTCATGGAATCTATTCGACATTCGA
CAAAATTAAAAAAAAATACTTACTGTTTATTCAGTTTCCTAATTTACAAC
GATCCATCGATTTTTCAACTTAATCGTCTTACTATTTTTGGAACTCGACA
TATATTGTATCTTTTCTCTAGAATGCTAATATCCAAGTCTCACCGAACGA
ACGCGCCATGTTGGGTTTATTCTTGGCCAAAATACAACAAATCGACCCCG
ATGTTCTTGTGGTAAGCAAATTCTTGACTGAATTTATTTTTTGAGGGTAA
ATTGTTAACAGGTAGACCTTTTCATAAATTACGTCACGAACATCAATTGC
CTCGTTTTGAAATTATTGCCATGGTGATTAACTCCCAGCGGTCTTTATTG
CAACTACTTTCTTTTCACAAAAAATATTTTAATGTCTCAAGGGATATGAT
CGCCATGGAAATTGTTTGAATGCGAGGCAAGTGATGTTCGTGACGTAATT
TATGAAAAGGTCTATAGCGAACTTAACTTAACTAAGGATTGAAATTAGAC
AGACAACATAATCAGGTTTAGGCCATGGTATACACGTCGACCAGGCCACG
CCATTTAAATGTGGTGAGTGGCTATTCTCCTTCTTTCTTTTGTAGATTTT
CCTTTCATACCTTAGAGTCATGATATACACACCGACCAGGTCACGCTCTT
GAAATGAGGCGAATTGTCATGCTATTGTCATGTTATTGAACTTGGAGAAA
AGGGGTGTTGAAACTTTTTGCTGAATTTTTTTAGACTTATTGAAAGTTTT
TGCTGGTATTCCTGTTTTTTTTTAGTTGTTGTACTTGTTTTGTTCATGGG
TTTTCTCTCTTTTATGTCTTCCTTTTTTACCTTAGGGTCATGATATACAT
GGATTTGATCTCGATGTTCTATTGGGAAGATTCACAGCCACTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024044XLOC_024044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039755-exon-sc0002189-1575043694:23351..23352TCONS_00039755-exon-sc0002189-1575043694:23351..23352Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1575043694:22956..23017TCONS_00039755-exon-sc0002189-1575043694:22956..23017Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1575043694:22342..22431TCONS_00039755-exon-sc0002189-1575043694:22342..22431Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1575043694:21657..21717TCONS_00039755-exon-sc0002189-1575043694:21657..21717Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1510915933:23351..23352TCONS_00039755-exon-sc0002189-1510915933:23351..23352Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1510915933:22956..23017TCONS_00039755-exon-sc0002189-1510915933:22956..23017Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1510915933:22342..22431TCONS_00039755-exon-sc0002189-1510915933:22342..22431Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1510915933:21657..21717TCONS_00039755-exon-sc0002189-1510915933:21657..21717Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1491911889:23351..23352TCONS_00039755-exon-sc0002189-1491911889:23351..23352Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1491911889:22956..23017TCONS_00039755-exon-sc0002189-1491911889:22956..23017Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1491911889:22342..22431TCONS_00039755-exon-sc0002189-1491911889:22342..22431Clytia hemisphaericaexon
TCONS_00039755-exon-sc0002189-1491911889:21657..21717TCONS_00039755-exon-sc0002189-1491911889:21657..21717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002189supercontigsc0002189:21657..23352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.80207	1.42402	0	1.60839	4.50428	5.96101	0	1.95083	3.55491	7.49377	0	0	0	0	0	0	0	0	0	0	2.86944	6.40226	0	0	0	0
Blast
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BLAST of TCONS_00039755 vs. Swiss-Prot (Human)
Match: DPOLA (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.672e-20
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:    2 VVTKTSDQLLPYDFQSTLKKKNANIQVSPNERAMLGLFLAKIQQIDPDVLVGHDIHGFDLDVLLGRFTATK 214
            VV+K  D + PY F+  ++KKN  ++V+  ER +LG FLAK+ +IDPD++VGH+I+GF+L+VLL R    K
Sbjct:  585 VVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCK 655
The following BLAST results are available for this feature:
BLAST of TCONS_00039755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLA7.672e-2049.30DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
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