TCONS_00039754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039754
Unique NameTCONS_00039754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039754 ID=TCONS_00039754|Name=TCONS_00039754|organism=Clytia hemisphaerica|type=transcript|length=1995bp
GTGGTCTTGTCCTCGAACCAAAGAAAGGATTTTACGAcaaatttattttg
ttgttgGATTTCAACAGTTTGTATCCTTCCATCATTCAAGAGTATAATAT
CTGTTTCACCACAATTGCCAGAGAAATGAAGAAGTCTGTCATCGAGGGCG
AAGAGCTGTTACCCGATGTACCCGAATCAGGATTGGAATTTGGTATTTTG
CCGACGGAGATTAAACGATTAGTCGAACGACGACGACAGGTCAAGAAATT
ATTGAAGACAGTAACTGAAGGTTCTGAATTGTATTTACAGTATGATATTC
GtcaaaaagctttaaagttGACCGCAAACAGTATGTATGGTTGTCTTGGT
TTCAGTCATTCCAGATTTTACGCTAAACCTCTTGCAGCTTTGGTTACCGG
AAAAGGGCGTGAAattttgatgaaaacaaAAGACTTGGCATCAAACCTTG
GCCTTGATGTCATTTATGGAGATACAGATTCTATCATGATCAACACTAAC
TGTGATGATTGGAACGAAGTCAGAAAGATTGGTACCAAGGTTAAACAAGA
AGTCAACAAATTgtacaaaatgattgagattGACATTGATGGCATCTTCA
AGTCCATgcttttgttgaaaaagaaaaaATACGCAGCTGGGATGATCCTT
GATCGAAAACCTGACGGTACTTTTGTGGAGAAAAGAGAAATGAAAGGGTT
GGATATTGTGCGACGTGATTGGTCAGATCTTGCCAAAGATGCCGGAAATT
ACGTCCTTGGTGAAATTTTGTCAGCAAAGTCACGTGATGTTATTGTGGAG
AATATCCACGATTATCTCCGTAATCtaAAAGACCAAATTGACAATGATCA
AgttgaccaatcaaaatatgaaattcaCAAGAGTCTGACGAAGAACCCAG
AAGAGTATCCAGACAAAAAGAGTCTTCCACATGTTACTGTTGCTTTGAGA
TTGAAAACCCAGGGTCGACGAGTTGCCGTGGGTGATACGATCAGTTACGT
CATCTGCGATGATTCTTCAAAACTTGCTGCCACACAGAGAGCCTACCATC
TTgaagaattaacaaaaagtaCAAGCTTGAAAATTGGTATCCTTTTCAAA
AGATTACAATTGATTTGCCTCTTGTTCCTTTCTTTGTAAACTTAGTAAAA
TAGTTTTGATGTCTTTTTATGTGTATAACCTAGTTTTCTTCTCACTGTAT
CTCACTGAGTTATCAGTCAAAAGCGAAAGGGTCCTGCTTACAGTCTACAA
AGGTCCTCCGCTCAGTGAGGTACAAGTACAGGCTTTTCCGTCtcgaaatt
caaaaacttctccaaagttttgatagtctagcaagctagacgactaattc
agacatagtagaataaagcaaaaagtaatggagggaacaaattttagtac
aaactaaatcctgtaacaataatcgtattatcgtATAACGCCTATAATAC
TGTATTACACGTATTatgaacgactccagtctaaaatttgaagaatcttt
ccttattttttgctttgacCATTCTTTTTAATGAACTATTAAATAAGCTA
AAGTAAATCTTACATTGAATTTTCCTAGACCACCCAAGGATCCACTTTAA
TTGAAACGTTTTTTTGGTAATTATGTGTGGCGGAGCCACTTTTAGGTTAT
TTTCATCACCGTATCCTGCGAAGAGCTGTAATCAAAATCTAGAATCATTA
CACACATACTTTATCACTTATTTTATCCTTGACTCGATCTCCCCTACAAT
TCAAAGACAAACAATATTACTTATCGAGTCAAATTCATCCATTGGTGTCT
CGATTATGCGATCCAATCGAGGGAACTGATGCAACTTTCATTGCTGAGTC
ACTTGGCCTGGACCCGACACAGTACAAATCAGCAACCAATCATCATGGTG
GTGACGATCCAAATGTATCTGTCTTGATGACCGATGAAGAACGCTTCAAG
GAGGATCCATTGAATTGTAGCCAATGTAAACAAGATTATAAAATG
Run BLAST on NCBI

transcript from alignment at sc0002189:5511..16561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039754 ID=TCONS_00039754|Name=TCONS_00039754|organism=Clytia hemisphaerica|type=transcript|length=11051bp|location=Sequence derived from alignment at sc0002189:5511..16561- (Clytia hemisphaerica)
GTGGTCTTGTCCTCGAACCAAAGAAAGGTTAGTCTGAATCGCTGACCTCT
ACTAAACGCGAGGTAGTTATATAAAGAGCACGAATCCGTTAGTGGATGCC
AGCAGCCTAAATAAAGGTATGACACGGTGACTTTATTATCGCCAGGGTTA
AGCGCGAGTTTTCTTTCGAAGGCGAAATGACACGAAGTTTATGATCCTTC
CTGAGGAAACTATCTGTAACTAAGCCTTATGCTCTTATAACGTTTGCTCT
TATAAAAAACCGTGTATTTCTTGACTGATTAGGAGTTTTTCTAATTTCAA
TAATCATCTCTTCTTCTTCATAGGATTTTACGACAAATTTATTTTGTTGT
TGGATTTCAACAGTTTGTATCCTTCCATCATTCAAGAGTATAATATCTGT
TTCACCACAATTGCCAGAGAAATGAAGAAGTCTGTCATCGAGGTAAAGCC
AACCCTCTCTCTCTCAAATTCGAATTCATGATATTCATGATGTAATGTTT
TATTTTGAATTTAAACAATGAAACTATTTGCAAACGCCAGGGCTACAATA
TAAAATATTACGTCATGAATATCATGAATCTTTCTGTAAATCGATTTTCA
GTTCCCGTCGTTCGTTCCTGTTTTTTCTTACTCACTAAATGTTTTAGGGC
GAAGAGCTGTTACCCGATGTACCCGAATCAGGATTGGAATTTGGTATTTT
GCCGACGGAGATTAAACGATTAGTCGAACGACGACGACAGGTTGGTTTTT
TTTTCTGATATGTTACTGTAGCCAATCAACGTTGATTCGAGAATTTAGAA
TCAGTGTTGAAACTTTTCCGTCTGTAGACGGAAATCTACACCTGTTACCA
GTTGAATTATTTAACGGATTTCAGGTCTAAAAAACAATCCTTCAAAACAA
AATTTAGTGAAATTGGAGTCAAATTTTAGACTTTTCGCTGGTTGCAACAC
TGACTGTAGACTGACGTTTCTTTTCTTTGAGCTTTTTATAAACTCCCCTG
TCCAGCAGACATGTGCATAACAGATATTCACATGTGCTTAACACAAAATG
ATGAGCCACGTTTCCGAGTTTTCCACACAACCTGCTTTTGTAATCTCTTC
GGTAATTCAGTAGGAATTGACTTAAATTGTTCGGTTAATTGAGTTTCTGT
CTTCGTTTTTTTTCAGGTCAAGAAATTATTGAAGACAGTAACTGAAGGTT
CTGAATTGTATTTACAGGTATTTTTCATAAGTATTTCTTTCCGTCTGCGG
CTGAATAAAATAAATACTGGTGTTAATTTTCGCTACGACGGGCAGGATTC
CTGCAGCCTTCATTCGCACAACGGTACTTTTCTACAGACTAGCCCGAAAG
CAAAGCATACACGGTCAATAAAAACATATCAACTTTGCTTTAGAACGAAA
GTTTGAATACCTGAGTTATTACTAACTTTATTTAGCACTATTGTGACAAT
GTGACTTGCCGTGGCACTCATAAGGTTCGACCTCGCGAGGTTCGCCCTCG
CGTGAGCATCGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATACGCCATG
GCTTGGCAGCTCGCGTCTGTCAGCGCCGTGATTCCTACTCCTTCATGGGT
AGGACCCTTCCCGAATGCATTCGGAGGGCTCATATCTATCTATTTATCAC
TATTGAGTATGCTAAAAATGAAATAATTTTGAATCTAACCACTGTCAATT
CGAGTTCGCTCGTTTGAGGTTTAGTAGTCTTACCTCAAAACATATTTTGT
GAATGTATATTGAGTTTATTGTTCTACATCTGCAATTTGAGCTTCCCTAA
GCTCTGATCTTTTGTGTACTTTATCCTTTTTTTCATTTCTTAAAATCTTT
TGTTATTTTCAGTATGATATTCGTCAAAAAGCTTTAAAGTTGACCGCAAA
CAGGTATTTCTAGTTTAGCTATTTCAGCTTAGATTATTTAAATGGTTATT
GTCAATTTTGAGCTTCACAATATATTTCCCCGGGGGGGGGGGCAGCTGGG
CAAAAGGACCGACGGGTATGTGCGGGTCCTAAGGGTACCTTTTCCAATAT
GTTTAAAATGCACTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTCACTGATTTTTGCTGCACTGTAAGGGTG
CAATTTTAAAAGCCAATTTTTGGCCCGCACATACCGTCAGTCCGCAAACC
CAGTGCCCCCCCCCCGGGTATATTTCTCAATAGTTTCAATGCAATCACTT
AACAATGATTTACAAAAACGGTGACTACCTATTTTTAATGACTGACTTTC
TGCTTTGGTTGGATGAATTTTCGCGGGGATTAAATTTCTCGCGCATTTTA
GTGTCATCCACGAAAGTAAGTCTAGATGAAAATTTTCAAAAGGCTTCATT
CACGAAAATAAGTCCCCGCGAAATATTTCAAAATCCATACTTGCTCTTTT
CAACGGATAAAAAATGATCCATCGTCAAAATTATCGCCATTAGAAATAGT
TTCTGTATTCATTCTGTTTTTATATTCATGAAAAAAATTCTCCGCGAAAT
ATTTGAAAGGGTGTCAACGGACACTGATAATGATGATAACAATTGGATTT
CTTCAGACCTTAATGTTTGCATATATCTTTCTACCCATAGTATGTATGGT
TGTCTTGGTTTCAGTCATTCCAGATTTTACGCTAAACCTCTTGCAGCTTT
GGTTACCGGAAAAGGGCGTGAAGTAGGCTTAATTTGCTTTTCCTAATTTA
TTTATTAATTTTTGCTTCTTCGATATTCTTATTATCTTTTCATATCTTGT
TATGAAAATGAAATATATCACAACCTTCCATAAATTTAAAAATGGTAAAT
TTAATCTCCGGGTGTGCCATAAAGGGCTATTCGATTTTATATCTATACAG
GATGGTGGACGAAAACCTCCCTGGGGTAACCCAAGAAGAATTCCCAGGGG
TTCTAAAGGGGTGTTTTTTAAATTTTTCTTTGTAAATTTCGCCATTTTCC
TGGGAGTATACAGACATTTCCAAGAATTTCCTTTTCACTTGAAAAGGTTC
GTCCACGCCCTCCCCCTCTATGGGATTTTAGTTGAACAGCCCGAAGCTGA
AAAGGATCTGATTGTTCCCTCCCCTTCTTGGCATCCTCTACCTTAAAAGA
TGCCGATCAAATATATAGAAAATCTATTTTTCCCCTCCACCACCAATAGA
TTTTGATGAAAACAAAAGACTTGGCATCAAACCTTGGCCTTGATGTCATT
TATGGAGATACAGATTCTATCATGATCAACACTAACTGTGATGATTGGAA
CGAAGTCAGAAAGATTGGTACCAAGGTATGTTGCTATTCCCACCCAGCTG
GCACACAACGTTGTTTTAACGTTCATCTACCGTTATATGGACGTTGTGAA
CGTTATACAAACGTTGAAACAACGTTGTGTGCCAGCTGGTCATAGATTTA
AAGCCTGAAGGGCTAGATGGCGTGCTTTATTAAACTCTTCCAAGCAAAAA
TAAGTGAATATCACAAAAAATATTCCTGCTATTGTTTTCAAAAACCTGCG
AAGCTTCTGATTGGTCAAGCGCTGAAATTCTATTGTAATGTCACGTGACT
TAGGTAGGAACCTCGGCACACTTTTCAGAAAAAGCACGATATCAAGCCCT
TCGGGCTTTTAATTTTATGGTTATTCCCAGCACCTATGTGACTTCAACTT
CTGCTTTTTAAATTTCGTCACTCAGAGATGTATTGATATACTAGGTGCAT
TTATATACAAGCAGAAACATAGCTAAAACTCATTGGTAGCTTATTGTCCC
AGCGTCGAGCCTTTTATTAGCATATCACATCATTGCGCTGACAGTGGTGC
TGTATGTCTGTTTTTGAAGAAGCAGCGTTTCGTCAATTCAAGTTCATTTT
GGAAGAAACGGCGCCTTTAAAACATTCGACCATTGCTTTGTTGCTTGGCC
TTTCTGCCGCTCACGGCTTCATGTTTCTTGCGGTCGAAAGTCTTGTTTCA
TCTAACGTTTCCAGATCATCTAAAAAGAACGACAAAGAACTTTTAAAAAG
CGACAAAAAGAACGACAAACCTTAACCCTAACTATCAAAGAACGACATAT
TTCGCCGTCCCAAACCACGACCTTGGCCAATGACTACCACTCTTACATAT
TCATTACTTTTTGTACTTTCCGCTATTTAACAACTAGCGGTTTAAAGAAT
CATAAATTACGCATGCGTGTAAGTTTCTATTTGGGTGAGCTGGAAACATT
AGAACATTAGAGTCTTTATATAGATTATGGTGATTACTCCCATAGGTTAA
ACAAGAAGTCAACAAATTGTACAAAATGATTGAGATTGACATTGATGGCA
TCTTCAAGTCCATGCTTTTGTTGAAAAAGAAAAAGTAAGTACAAAATTTT
TTTTATAAGAACATAAGACTGCGATAGCCAAAATAGTAAGAATAAGTTGA
GAACATTTTTGCGAACTCTTACAACACCAATTTCCTTAGATATTGCATAA
AAATACTCACAAAATGGCGAAAATTAGAACATCTTTATAAGAGCATTTTT
AGACTTAAAGCTCAAAAAGTTAAGAACAGCCAATATTACACTCGATATTC
TTACATAAAAATACGTATATAAGTCTAGCTTACTAGACGAGAAAATTTTA
GTCCCTTTTTGTCCCATGAAACAAACAATGAAATCATGGGACACATTTTT
TTTTCTTGTGTTGGTGGGATTTAGCATGTTGCATTGCACCAACGCAAAAA
AAAACTTCTCGTGTCCCCAAGCCTTAAGTGGGATATGCCAAGGAAAATTG
AAGGGCATAACTAGATTTTAAACAAGCCAATAGTATCCTGTAAAAAAATT
TTTTATCACATCACACCTACAATATTACATACTGAAGTGAGCACTTTTTA
AACACCAACAATACTACAACAATAATCGAGTTTTCATCAAATAGACATCT
TTACCCAACTGGACTTGAGTGGGAAATTTGATATTTGCGTGTGTTATCGC
GAGACTTTATATTAGATTTCTTCAACATATTTTATCCTAATATTATTATT
CGTTTTGACCAATAGAAGGAGAATGGTCCAGATAGTCACTTTGTAGTTTA
ATATTTAAATTTTCTCTCTTTAGATACGCAGCTGGGATGATCCTTGATCG
AAAACCTGACGGTAATTATACAAATTTTAAAGGTTCATTTTTTGTTAGAA
AAAGATAATTCAAGTGCGGTGCTATTTTTGCAATCGATCAAATATCTCGA
ACCTCTAAGACTCGAATGTATCCTTAACTCGAACAACTTTTCTTGCCCTT
TCAGCTAACATTGTCTTATAAACCTTACTCCATAACTCGAAATTTCCAAA
ACTCGAACAAATTTCGATTTTCCGTGCGTTGTTCGAGTTATGGAGACTTC
ATTTCATCACCACGAATATTTATTTATGCCTTTTTTTCATATCTGTTTCT
TTAAAAGGTACTTTTGTGGAGAAAAGAGAAATGAAAGGGTTGGATATTGT
GCGACGTGATTGGTCAGATCTTGCCAAAGATGCCGGAAAGTAAGTTGTTG
TACTCCAGCTCTAGTCTAGACGGCCGGCATTCTGCCCTGTCTATTGTGGG
CAGAAAGTTGATAGTTAAAACCTTAGCTTGGAAAAGACTGACAGTTATCA
TTACATTGATGTTAAGTATGTCAATTTATTGTTTACACAGATAACTTTCT
TCCTACTTTAATTTACAAATAGAAAAGGCAGATTAGAATAGAATGGAATA
GGCAGTGCGAAAAACAGGCCGTCTAAACTAGAGCTTATAGATTTTTCTGG
CCTTTGGCGAGCAAAAAAATGATCAAATCCTAAAAGCTTTAGTAACTAAT
TTCTTATTTAATGTTATATTTCAGTTACGTCCTTGGTGAAATTTTGTCAG
CAAAGTCACGTGATGTTATTGTGGAGAATATCCACGATTATCTCCGTAAT
CGTAAGTTGATGATTTAGCTCTTGTTGTAGAATTTTTTACTGCTCAATCC
ACGGTCTGATTACAATGAATTTTAAACTACCTTATCGCACTAACAGGATT
ACTTACGTAAAATGAGCTAGGTATTGCTAACGATTGGACACACTTTGGAA
TTTTGAGCCCAGTTCATTTTTCCAAAAATTTTGCCTTTTACACGTTAACG
AAATGACGTACTGGTTGAGTCCATTAAAACTTAAATGATTATTTAAGAGG
GCGAAAGAGGTTCCTTTCAATACTTCAATGTTTCAAATATTCAAATTTTG
ATAAACGTCGGGACCTAATTATCGAGCCGTTGGAATTGATCGATTATTAG
GCACCTGAGAGTAGGTTTGAAATAAATTTGTCATTTTTCTTCTTTAGTAA
AAGACCAAATTGACAATGATCAAGTTGACCAATCAAAATATGAAATTCAC
AAGGTAAAATGAGTACATTTGTACAGCTTGCTTTTCCGTTAATTCATGGA
ACCTTTTCTCGTATGTATGTTAATACATTTTGATTCCGGATAGAAGATTT
CAATGGCCTCAAGAAGCCTACGTTTATTATGTCATCTCCAAGAAATATTG
AACTGTTTCCCTGTCATATGACATCATCAGCTTTTTTTAGGGAAAAGGTC
TTTCCTAGAAATTCAGATTTGTTTCCCCATTTGTATCGAAAAAAGCTCTC
TCCTGGAAAAGGGAAACAGATAATTCGCAGAAGTGAGCTCGTTGACTGCT
TCTTTAATTCCAAACTGCTTCAATCACCCTGCCGTTAGGTATTCTGATCT
AATTGGTTTTACAAAGATGATCAGTTAATGGTTTATTTTTACAGAGTCTG
ACGAAGAACCCAGAAGAGTATCCAGACAAAAAGAGTCTTCCACATGTTAC
TGTTGCTTTGAGATTGAAAACCCAGGGTCGACGAGTTGCCGTGGGTGATA
CGATCAGTTACGTCATCTGCGATGTAAGTACATTTCGTAAATACTACACT
TTATAGTAGATTATCGACAAATCGAACTTCTACAACTCGGATGTCTCTAT
AACTCGATCAATTTGTGGTCCCCTCAAGGAAAAAACCTTATGAACAAGTT
TCTATGACTTGATCTTTTCATAACTCCGATAATCTTGCGCTCCGAGTGGG
AACACGCATAGAGAACGTTATTATCATTGTACTTTGTCTATAATAGCCCC
GGGATATGGGATACTAGGTTTGCAAAGTGATGATGGGCCAAAAATCCAAA
ATCTACTCTTAGAGAGAGAAAGGATTAACGTTTTTGGGATCCTTACAGGG
GCTTTCCCTTAAGTTTTTGTCGATTTTCACCCAATTTTGATTCAAATTTT
TGAAAATTACGAGCCTTTGATTTGGGAGGTTTAGAAACATTCTTGATAAT
AAAACCATTTTTCAACTTTTTGTAGAAATAACATGGTCGGGGGATGACTT
GGGATTATAATTCCCGAGGTTCAATGAAAGGGGAAGACAAAGCAGGGAGA
CTAATTCTTGGACCAGGCTACATTTTTCTGCCTAAGCAAAACTGCTAGAA
CTAGGCTATTTTACAGTTAAATATAGGTACTTTGTCTTTTAAACAGGCGA
AGACTTCTGTCGAACACCGGTTTATGAAATTAATTTATATTTTTTTCTTC
ATCTTCAAAGGATTCTTCAAAACTTGCTGCCACACAGAGAGCCTACCATC
TTGAAGAATTAACAAAAAGTACAAGCTTGAAAATTGGTATCCTTTTCAAA
AGATTACAATTGATTTGCCTCTTGTTCCTTTCTTTGTAAACTTAGTAAAA
TAGTTTTGATGTCTTTTTATGTGTATAACCTAGTTTTCTTCTCACTGTAT
CTCACTGAGTTATCAGTCAAAAGCGAAAGGGTCCTGCTTACAGTCTACAA
AGGTCCTCCGCTCAGTGAGGTACAAGTACAGGCTTTTCCGTCTCGAAATT
CAAAAACTTCTCCAAAGTTTTGATAGTCTAGCAAGCTAGACGACTAATTC
AGACATAGTAGAATAAAGCAAAAAGTAATGGAGGGAACAAATTTTAGTAC
AAACTAAATCCTGTAACAATAATCGTATTATCGTATAACGCCTATAATAC
TGTATTACACGTATTATGAACGACTCCAGTCTAAAATTTGAAGAATCTTT
CCTTATTTTTTGCTTTGACCATTCTTTTTAATGAACTATTAAATAAGCTA
AAGTAAATCTTACATTGAATTTTCCTAGACCACCCAAGGATCCACTTTAA
TTGAAACGTTTTTTTGGTAATTATGTGTGGCGGAGCCACTTTTAGGTTAT
TTTCATCACCGTATCCTGCGAAGAGCTGTAATCAAAATCTAGAATCATTA
CACACATACTTTATCACTTATTTTATCCTTGACTCGATCTCCCCTACAAT
TCAAAGACAAACAATATTACTTATCGAGTCAAATTCATCCATTGGTGTCT
CGATTATGCGATCCAATCGAGGGAACTGATGCAACTTTCATTGCTGAGTC
ACTTGGTAAGATGAGGCTTGCCTGCTTTTTTTTATTTTTTTTGATCCTCC
TACCGGGTGCGGCAAAGAAAGTATACAGGATTGTCAAGGTATTGTGAGCT
TATGGTTGACGATTTTTTCGTTGGTTCATTTTTTATTCTTTAGAGGAAAA
CTTAACTTAGATTTTGGTATATAAAACTTTAAAATCAAAATGTTATATTA
AAAAACTGAAATTTTTGACCTACCTAAGAATGACAAAATTTATTAATCAA
CAACAAAATCTTTAGTCGTAAACTCTTCACAAAACTGTGTACTTTTTTGG
CACACCTGTTATATTTACCGAAAGTTAGAAATCCATTACCGTAGAGGACC
AAGTGCATATAAAAGCACCTTTCTACAGAAATCCCTATACGGGTACTCAA
AAATCATTGAGAAACAACCTGCAAGCATTTGAAATCAATTTGACAATTTT
GGTCGTCACGGATCGATGGTTTCCTAAAGGTTAAACTGAAATCCTTCCTA
GGCAAGTTTTACCCCGTTTACCCCATTGAACACCTGAGCTGAGCAAAGAA
TTCATGATTTTCATGACATAATGTTTTATACGGAAGCACCCAAAAAAGAC
CGGGTCTTTGTCAATAATTTTGAATTCAAACAATAAAGTAGTGGCATATG
CCCGGAATATTTTGAGTACTTCCGTATGAAACACCACGTCGTTAACATCG
TGTAAATTTTCTTCAAAACTCATTATTCTTGTATTTTACTTCTTTCATAA
TTTTTAGGCCTGGACCCGACACAGTACAAATCAGCAACCAATCATCATGG
TGGTGACGATCCAAATGTATCTGTCTTGATGACCGATGAAGAACGCTTCA
AGGTATTTCAATGGTGTTAACTTTCGTGGAGATTAAATTTCGCGGTTGAG
CTTATCCGCGAAACTTTAAGATTTTGCGGGGACTTAATTTCGCGGACGGC
ATATTGGGTGACAATATTTTCACGATTTTTTTCCTCTTGCTGTCAAATAA
TGCATGTTGTTTGTTGAAATACGCATTATTAGCGCTTCTTTGATGCCAGT
AAACATTCAAAAAGTATTTATTTGACATTTTTTGAGATTTGTTTAGAAAC
ATTTCGCCGGATTAAAAGTCCATCGCCAAATTTTGAAAAATTTTCTTGCT
TGAGAAAAGTTGAAAATTCATGTACTGAGCCTTTGTCTGAATTCAAAGGA
TCTCAAGATACCAAGGTAGGAATCACAAAAATTGTTCGATTTGGCTGAAA
TTTGGGGGCGTTTTTTTTTCATTTTTCAAAAATTTTGATTTTTGGGGCCT
GGTGGCGAGTTTTTTGCCAAAGCGAGGCTAAAACTTTGGGGCAGCCTTCG
GAGACTTGAAAAATTGTACGATTTTGCTGAAATTTTGCACACTTGTTCCT
TGGGTGAATATCTGGGGTGTTTCTTTCACCGTTTAGCCAGTTATTTTTAA
AGGTTTCATGCAAGTTCGTCCACCCTATAATTTGAGCATCTACAATCGGG
CCTTTGCGTTAGTTGTAAAAATACTGAAGTGCGTTGCGCACGTTCGACTA
TTTTTGCAAAGACCCAGTTTTACGTGAACATTTGATGATAAAATCCTTAG
GGTAGAGGCTTCCTACCTCGAATCTTTCCTTTATTCGAACAAGTTTGTTG
GTCCTATCAGTTAAAAGTCTCTTAAACCTATCTCTCTTCATAATTTCGAA
TTGAAACAAATCTGTGAACGCTGTATTTTGATGCCAATCCCTTCCTTATA
CAGGGTGTCCCGTAAAAAAGTCCTGTTTCAGAACACGACTTCAAGTAGAA
AAGTTTTTGTGTATGCATGTCAAAAATTAGTATCGATCATTAATGTGTTT
TTACTTTGTTTGAAAGAGACGTTCATACAGGTTCATGAAAATATTTTATT
ACACGATTGATGCTTTAATTATGTTTGATTGATGCTTTAATCATGTTTGA
TTGATGCTTTAATTATGTTTAGAAGTTTATTGCTTCATTGTAACCATTTA
AATTTTCTGCTCTCGTCGTGTTCTAACATAGGACCCTTTTTTGGGACACC
CTGTACAACTTGTAAGATAGTGAAATGAAACCATTCTATTGGTTACATTC
AAGTGTTACGTCACATCTAACCAATAGAATGGCTACATTCTATTTCGGAG
CGAAACGGAACCGTCGCGTGCGAATATGGTCTAATACTCTACTTATTATA
TTATAGGAGGATCCATTGAATTGTAGCCAATGTAAACAAGATTATAAAAT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024043XLOC_024043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039754-exon-sc0002189-1575043694:16535..16561TCONS_00039754-exon-sc0002189-1575043694:16535..16561Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:16120..16238TCONS_00039754-exon-sc0002189-1575043694:16120..16238Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:15822..15914TCONS_00039754-exon-sc0002189-1575043694:15822..15914Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:15345..15395TCONS_00039754-exon-sc0002189-1575043694:15345..15395Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:14659..14699TCONS_00039754-exon-sc0002189-1575043694:14659..14699Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:13490..13571TCONS_00039754-exon-sc0002189-1575043694:13490..13571Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:12887..13012TCONS_00039754-exon-sc0002189-1575043694:12887..13012Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:11828..11916TCONS_00039754-exon-sc0002189-1575043694:11828..11916Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:11051..11088TCONS_00039754-exon-sc0002189-1575043694:11051..11088Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:10673..10754TCONS_00039754-exon-sc0002189-1575043694:10673..10754Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:10261..10337TCONS_00039754-exon-sc0002189-1575043694:10261..10337Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:9809..9864TCONS_00039754-exon-sc0002189-1575043694:9809..9864Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:9289..9417TCONS_00039754-exon-sc0002189-1575043694:9289..9417Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:7757..8601TCONS_00039754-exon-sc0002189-1575043694:7757..8601Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:6910..7004TCONS_00039754-exon-sc0002189-1575043694:6910..7004Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1575043694:5511..5555TCONS_00039754-exon-sc0002189-1575043694:5511..5555Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:16535..16561TCONS_00039754-exon-sc0002189-1510915933:16535..16561Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:16120..16238TCONS_00039754-exon-sc0002189-1510915933:16120..16238Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:15822..15914TCONS_00039754-exon-sc0002189-1510915933:15822..15914Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:15345..15395TCONS_00039754-exon-sc0002189-1510915933:15345..15395Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:14659..14699TCONS_00039754-exon-sc0002189-1510915933:14659..14699Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:13490..13571TCONS_00039754-exon-sc0002189-1510915933:13490..13571Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:12887..13012TCONS_00039754-exon-sc0002189-1510915933:12887..13012Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:11828..11916TCONS_00039754-exon-sc0002189-1510915933:11828..11916Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:11051..11088TCONS_00039754-exon-sc0002189-1510915933:11051..11088Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:10673..10754TCONS_00039754-exon-sc0002189-1510915933:10673..10754Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:10261..10337TCONS_00039754-exon-sc0002189-1510915933:10261..10337Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:9809..9864TCONS_00039754-exon-sc0002189-1510915933:9809..9864Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:9289..9417TCONS_00039754-exon-sc0002189-1510915933:9289..9417Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:7757..8601TCONS_00039754-exon-sc0002189-1510915933:7757..8601Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:6910..7004TCONS_00039754-exon-sc0002189-1510915933:6910..7004Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1510915933:5511..5555TCONS_00039754-exon-sc0002189-1510915933:5511..5555Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:16535..16561TCONS_00039754-exon-sc0002189-1491911889:16535..16561Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:16120..16238TCONS_00039754-exon-sc0002189-1491911889:16120..16238Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:15822..15914TCONS_00039754-exon-sc0002189-1491911889:15822..15914Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:15345..15395TCONS_00039754-exon-sc0002189-1491911889:15345..15395Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:14659..14699TCONS_00039754-exon-sc0002189-1491911889:14659..14699Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:13490..13571TCONS_00039754-exon-sc0002189-1491911889:13490..13571Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:12887..13012TCONS_00039754-exon-sc0002189-1491911889:12887..13012Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:11828..11916TCONS_00039754-exon-sc0002189-1491911889:11828..11916Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:11051..11088TCONS_00039754-exon-sc0002189-1491911889:11051..11088Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:10673..10754TCONS_00039754-exon-sc0002189-1491911889:10673..10754Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:10261..10337TCONS_00039754-exon-sc0002189-1491911889:10261..10337Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:9809..9864TCONS_00039754-exon-sc0002189-1491911889:9809..9864Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:9289..9417TCONS_00039754-exon-sc0002189-1491911889:9289..9417Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:7757..8601TCONS_00039754-exon-sc0002189-1491911889:7757..8601Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:6910..7004TCONS_00039754-exon-sc0002189-1491911889:6910..7004Clytia hemisphaericaexon
TCONS_00039754-exon-sc0002189-1491911889:5511..5555TCONS_00039754-exon-sc0002189-1491911889:5511..5555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002189supercontigsc0002189:5511..16561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143016	0.240692	0.723032	0.656514	0.0889172	0	0.317775	0.472987	0.281527	0.449115	0.497598	0.315633	0.143659	0.206845	0.154117	0.0587313	0.065702	0.107757	0	0	0.0627452	0.20846	0.0785825	0.189989	0	0.253652	0.119612	0.447908	0.14197	0.0597239
Blast
[Close]
BLAST of TCONS_00039754 vs. Swiss-Prot (Human)
Match: DPOLA (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 461.455 bits (1186), Expect = 5.386e-145
Identity = 239/366 (65.30%), Postives = 293/366 (80.05%), Query Frame = 3 
Query:    3 GLVLEPKKGFYDKFILLLDFNSLYPSIIQEYNICFTTIAR---EMKKSVIEGE-ELLPDVPESGLEFGILPTEIKRLVERRRQVKKLLKTVTEGSELYLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTGKGREILMKTKDLASNLGLDVIYGDTDSIMINTNCDDWNEVRKIGTKVKQEVNKLYKMIEIDIDGIFKSMLLLKKKKYAAGMILDRKPDGTFVEKREMKGLDIVRRDWSDLAKDAGNYVLGEILSAKSRDVIVENIHDYLRNLKDQIDNDQVDQSKYEIHKSLTKNPEEYPDKKSLPHVTVALRLKTQ-GRRVAVGDTISYVICDDSSKLAATQRAYHLEELTKSTSLKI 1085
            GLVL+PK GFYDKFILLLDFNSLYPSIIQE+NICFTT+ R   E +K   +GE E +P++P+  LE GILP EI++LVERR+QVK+L+K      +L LQYDIRQKALKLTANSMYGCLGFS+SRFYAKPLAALVT KGREILM TK++   + L+VIYGDTDSIMINTN  +  EV K+G KVK EVNKLYK++EIDIDG+FKS+LLLKKKKYAA ++++   DG +V K+E+KGLDIVRRDW DLAKD GN+V+G+ILS +SRD IVENI   L  + + + N  V  S++EI+K+LTK+P++YPDKKSLPHV VAL + +Q GR+V  GDT+SYVIC D S L A+QRAY  E+L K  +L I
Sbjct:  842 GLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAA-LVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTI 1206
The following BLAST results are available for this feature:
BLAST of TCONS_00039754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLA5.386e-14565.30DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
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