TCONS_00039746 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039746
Unique Name	TCONS_00039746
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	813

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002188:4800..11724+

transcript sequence

>TCONS_00039746 ID=TCONS_00039746|Name=TCONS_00039746|organism=Clytia hemisphaerica|type=transcript|length=813bp
GACTGATATCACATACATTTTAGTAATTGTGTGAAATACAGAATTGCAGG
TGTTTTGAACCTTGCCAGTAAGCTACGTCTACAGTAAGCTACTGTAGGAG
TACTCTCtattcttgaaataaaaaacaagtaTCATCACAACTCATTGTTG
GTGCATTTTTATGTAAACAAAACTTGAGTTCATATTTTTGTCTGATTGTA
TGTTTGATGGCTTTTTGAAAGGAACTTGTGTTCAAGAGTAGCTTTtttaa
aagctatttcaaatttttgctttcagATCACTCAATGTAACCCTCAATGT
AAATATAATTCGGATATAATCAAAGAATgaatgactaatttttcataggA
ATGTTTCATTATCAAATGTACTCTACAACAATGGGGAAAGCATTGAGCAC
AGTCATCTTGAAAGAACATTGACTGAGAGTGAAAGAACATTGACAGCATT
AAACTTGTCAATACACGATGAAGGAAAAATGAGTGGGTTTTTACAGAAAT
GGCAATGAACGTGTCAAGGAAATTTATTCAGACAGACAGAGGGAATCAGC
ATCAAGTGATGAAGAAAAATTTGCACTAAATGTAGCATCCTTGATGGTGG
ACAAATAAGTGACTGATAATGAATATGACAAGGATATTGATACATACACA
GATACTGAAACAGAATCGGAAAGTTCAAGTGATGAAGAAGAATCTGATAC
GGATCAAATTGAATATATTGGTGATCAAGTGATTTATTTTGATGGATAAT
CAGCATTCAAAAGATGTCCAAATTGAAGAAATGCTGTTAACTGGATGCTG
GACATATGCTGCC

Run BLAST on NCBI

transcript from alignment at sc0002188:4800..11724+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039746 ID=TCONS_00039746|Name=TCONS_00039746|organism=Clytia hemisphaerica|type=transcript|length=6925bp|location=Sequence derived from alignment at sc0002188:4800..11724+ (Clytia hemisphaerica)
GACTGATATCACATACATTTTAGTAATTGTGTGAAATACAGAATTGCAGG
TGTTTTGAACCTTGCCAGTAAGCTACGTCTACAGTAAGCTACTGTAGGAG
TACTCTCtattcttgaaataaaaaacaagtaTCATCACAACTCATTGTTG
GTGCATTTTTATGTAAACAAAACTTGAGTTCATATTTTTGTCTGATTGTA
TGTTTGATGGCTTTTTGAAAGGAACTTGTGTTCAAGAGTAGCTTTtttaa
aagctatttcaaatttttgctttcagATCACTCAATGTAACCCTCAATGT
AAATATAATTCGGATATAATCAAAGAATgaatgactaatttttcataggA
ATGTTTCATTATCAAATGTACTCTACAACAATGGGGAAAGCATTGAGCAC
AGTCATCTGTGAGTATAACCTTTTTAAACTGAAATTATTACTATACATTT
TTTAATGGAACTGCTGTAAACAACGTCACTTGTCAGAGCtaaatgaattt
aattttttttctagctattttcattgaaaaagtaGGAATTCTGGCCCAAA
TACTTTTAAAAGGCTTTTTCGTGAAGGTGAATGCCTCTTTATTAAGAATT
CTTAAcaaattgcaaaagtttatgcttgtattctcaaattcaaacttttt
taaatcaaaatttaaaatgtcccTAGTAGTAAAATCAATCATTGCCTTAA
TTTTAAGACtgacatttttaaacattttttagaaCTGCTGAGAGTGAAAG
AACATTGACTGAGAGTGAAAGAACATTGACTGAGAGTGAAAGAACATTGA
CAGCATTAAACTTGTCAATACACGATGAAGGAAAAATGAGTGGGTTTTTA
CAGAAATGGCAATGAACGTGTCAAGGAAATTTATTCAGACAGACAGAGGG
AATCAGCATCAAGTGATGAAGAAAAATTTGCACTAAATGTAGCATCCTTG
ATGGTGGACAAATAAGTGACTGATAATGAATATGACAAGGATATTGATAC
ATACACAGATACTGAAACAGAATCGGAAAGTTCAAGTGATGAAGAAGAAT
CTGATACGGATCAAATTGAATATATTGGGTATGTTTTGCTTACTTTTTCT
TGATTATAATATACAATCTGTTTTTCCACTGGTTCTCAACTTcaattgag
ctagaatctgagaatgtacGTCTGTTAGTCAGTCAGTATGTCACCTCAAT
AAAACTTTTGGACagactggagacttcaaaaatggtcagatttggctaNC
TTTTTCGTGAAGGTAAATGCCTCTTTATTAAGAATTCTTAAcaaattgca
aaagtttatgcttgtattctcaaattcaaatttttttaaatcaaaattta
aaatgtccctttagtaccttaagtggataaattttggcggggattaaatt
tggagaatttggcgaattttgcNgatgtttttgaaaatttacaattaTGT
AAGCAACAACACAATGGccttacttttttctttctttgattggatATGTG
ACAAAATTATGTAAAGTCGTTTAACCTTTTCCGGcagatttcttttttat
cattgttgcagaaatctttgaaaatcggGAACTTTTTAACTGCAATTATG
TATGAGaccatttgatttgatttgttcTGAACTAACCATGAACCTCTGTC
AGCAGAGGTGCTAAAAACTTGGTCTTGCAGGTCTGATagtattatctttt
ttctggaCCTGGTTAGCTCGNgccaaattaaatccccgccaaatttaaca
aaaagagaattatgtgaaagATCACAAcgttttagaatatttttgattaa
ttttcacTCATTtagtgtgacaaaatttccaattcgccaaattaaattcc
cgccaaattttacaaaattgatctatccccaaattaaatccccaccaaaa
atcatattttggcaaatcgccaaattaaatccacgccaaaatttatccac
ttaaggtagtaaAATCAATTATTGCCTTAATTTTAAGACtgacattttta
aacattttttagaaCTGCTGATAGTGAAAGAACATTGACTGAGAGTGAAA
GAACATTGACAGCATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTACCACTTAACAG
GGGGGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTAT
TTCTCAACCAGTACTATTGAATTATTTCCCCTTGATAACTGCTTGATAAT
GATATTGTCAAACCTTTTTAACAATAAGCTTGTCATTCAAGGCTTCAGGG
gactgaacaaaaaaatttaaggaAGTTTTTATGGGTGTTTTTGAGGAGAT
GTAAATCTGAACCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGTTTACTCATGAGGTCCTGG
AAATGTTCTCAATCTACACGTTCTATTATTAGTTTTAACAAATTACCAAG
ATAACTGCTTTTGCAGCATTCTTTATAATGCCAAATTAATTTAAGATGGA
CTGAAATTAataattgagttttaaaaagaaatcatttgcTAAAAGAAAAC
TATTCAAATAATTGATAACCAAATATGAGGCACTATTCCTATCACTGTTA
TCCAACTTGTCAGATTGTCAtactttgaaattgaatttccTCTATTTAGC
TTATTTAACTTCTTACTTAGACAACATTTCAGAGGAGCCGTGCTTTCAAT
ATGTGAGAGGACCTGGAATATTAGTTGAAAATTCTTCTTGCACTTATGGT
AAatgagaaagtgaaaaatatgacTTATTTTAACTGCTTTTGCTTActag
tttgtttttaatttgattgTCTTGCCTACTTTTAATTGTGATTTGTTACA
TAAATTTTTGTTCCTTTGAATGAACTACTATAGCATTTTTATCTACGTTT
TGTTGatacaatattttcaaatcgAAGAAAAAGTTTGAATCAAATATTTG
TAatctgattaatttttttttcactctagTGATCAAGTGATTTATTTTGA
TGGATAATCAGCATTCAAAAGATGTCCAAATTGAAGAAATGGTAAAATTA
TTGTCTCTTGGGTTTAATGGAATATTACATTCTGCTGGGGGTCTCAAAAG
GGGGTGGCAAAAGGGGGCggcaaatgtttcatttcaggGAGATTCTGAAA
AGGAGAAAGAAGGAGAGCATGGGAAAAAAGTTCTGACAAAGCTCATACCA
TTTGCAGCAAATTTATTACTTAGCNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNTTCTAAAAAGTATgcatatttttggcaaaatttaagaataatg
gGCTAAACGTCTCAGAGGGAGGGGCAAAAGATGTTTCCATTTTCTGGTTT
GGAAGGTTATCTTTTGGTTTACAGACATTGGAAAGGAACCTTTAGACCGg
atgatggaaaaaaaattaaaattaattttttttttttcaaacttgaatta
atggttgagaaaataaaagaaatgtgttTTGAGATACCAGAAAACAACGA
CATTTTTCTAGTAGTTAACTTGTGTTAAGGGTGCCATTAAGGAAAGCATA
CAGTATTGGAGAGCTTTTGTTATTCCTTTCTATCGCATCATACCATATCN
TAAGGAAAGCATACAGTATTGGAGAGCTTTTGTTATTTCCTTTCTATCGC
ATCATACCATATCATCCGATACGATCAGCTCCATTGATATCCTGTGTGGC
CTTCTTGGTAGAAAATTAAAACTATCCATCATGACGCCTGCTTTTAACCA
TGCAGATCATGGCTTATGATTGAAGCAATTCCCTTTCCATTTTAGCTGTT
AACTGGATGCTGGACATATGCTGCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024038	XLOC_024038	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039746-exon-sc0002188-1491911889:4800..5207	TCONS_00039746-exon-sc0002188-1491911889:4800..5207	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1510915933:4800..5207	TCONS_00039746-exon-sc0002188-1510915933:4800..5207	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1575043694:4800..5207	TCONS_00039746-exon-sc0002188-1575043694:4800..5207	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1491911889:5565..5877	TCONS_00039746-exon-sc0002188-1491911889:5565..5877	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1510915933:5565..5877	TCONS_00039746-exon-sc0002188-1510915933:5565..5877	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1575043694:5565..5877	TCONS_00039746-exon-sc0002188-1575043694:5565..5877	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1491911889:10729..10790	TCONS_00039746-exon-sc0002188-1491911889:10729..10790	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1510915933:10729..10790	TCONS_00039746-exon-sc0002188-1510915933:10729..10790	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1575043694:10729..10790	TCONS_00039746-exon-sc0002188-1575043694:10729..10790	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1491911889:11695..11724	TCONS_00039746-exon-sc0002188-1491911889:11695..11724	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1510915933:11695..11724	TCONS_00039746-exon-sc0002188-1510915933:11695..11724	Clytia hemisphaerica	exon
TCONS_00039746-exon-sc0002188-1575043694:11695..11724	TCONS_00039746-exon-sc0002188-1575043694:11695..11724	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002188	supercontig	sc0002188:4800..11724 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.703828	0	0	0	0	0.0720539	0	0	0.757987	0.98667	3.12904	1.71959	2.23848	0.458976	0.108488	0.0353358	1.39977	1.27941	0.0694125	3.39246	4.06612e-09	1.11437	1.49177	0.200788	0.348429	0	1.09379	0.660001	1.04966

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00039746 vs. Swiss-Prot (Human)

BLAST of TCONS_00039746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00039746 (transcript) - C. hemisphaerica