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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039741 ID=TCONS_00039741|Name=TCONS_00039741|organism=Clytia hemisphaerica|type=transcript|length=275bp
GGTGAGAGTGAAAGTGAACCAGAAACTGATTCCTCAAACAGCCAAGAAAG
TGGAACAGATGAAGAAATGATTGTTGCTGAAGTTATTGAAAGTGATGACG
AGCAACAGACTGTTGATGTCTGAACATGATGATGGCGATGCTCTTCAGCA
AGTTACAGAgAATGTTTCATTATCAAATGTACTCTACAACAATGGGGAAA
GCATTGAGCACAGTCATCTaaCTGCTGATAGTGAAAGAACATTGACTGAG
AGTGAAAGAACATTGACAGCATTAA Run BLAST on NCBI transcript from alignment at sc0002188:27..6867+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039741 ID=TCONS_00039741|Name=TCONS_00039741|organism=Clytia hemisphaerica|type=transcript|length=6841bp|location=Sequence derived from alignment at sc0002188:27..6867+ (Clytia hemisphaerica)
GGTGAGAGTGAAAGTGAACCAGAAACTGATTCCTCAAACAGCCAAGAAAG
TGGAACAGATGAAGAAATGATTGTTGCTGAAGTTATTGAAAGTGATGACG
AGCAACAGACTGTTGATGTCTGAACATGATGATGGCGATGCTCTTCAGCA
AGTTACAGAGtgagtgattcttataaatccCTAAATTGCGGTAGTTATTT
TCACTGTAATTGCGGTGTAAAAATCGcctttaaatttttcacatACCCAG
GCGGTGTCAATTGAACTGTTCGATTATCTACTGTTCGATTATCTGActaa
tcaaacttaattgaacacgaccctcgacatggcctgagaattctcgggcc
aaaacttttattggaattcgcgtaaagcccgagcatggcccgagctggcc
cgagaatttGGGCCGTGTTCGGGCCACGCACGGGCCACACTCGGGCCAAT
TTTTGAAAACATGATTTAAACAGGCGTGTAATTTCAAGACTGAATTTTTT
TAAGTTAAAAAACCAAAACCCCGTCTTAACATTGAAATCGCGCTTCCACT
AAATCGCGGCGAGAGGTTTTAGTCACATGACTGAAATGCCTATTTTAACA
TTTTCTTTGAGAAAAACTTGGTTTCTCTTAATTATATAttaaatatatga
atgttgtaaattcatataaatattaaatgtcttatttggtatgaaaacat
agttacaaatatacttagggtggaaatatttgctagtaaactggtcctgg
ttttaaactgaagcgtgtccacgggaagctcgtaaagcttttttgagcga
tataaacaaaacagacaaatcttattttgtactattttgtttgactggac
atactgaatcaatttaaaatttaacatggcccgaacatggcccgaacgac
tcgggtcatgttcgggccaaaagaattgatagggtcttttggcccgaaca
tggcccgaagaggcccgagaattctcgggccatgtcgagggtcgtaatTG
AACCCTATCAAAAGATACCTCTGTTCTATTACCGATCCCAACCAAACACC
TATTGATCCGAGAAAACTTTTGTTAAGTTTGATAACTGttcgatagacct
ttttgcctttccatccgccatattgaaaattatggtggccgaattgctgt
ggtgaaatttccttagaaagtatgcaaaacatatgcaaaaaagAAGTATT
AATATAGAACTTACATGCacaattggcattatattaaagtgtaatcttgt
tgaagaaagattaaatttgcttctcttgaaatctaaaaataattatattc
actcatctcttagaacaagcacttcaaaaaaccataacattagacataaa
ctcaagctaaAAGATCACCAgcaaaggtacaaaaataatccttattcggc
cgacggtaaattattctcctgggaatagaaccatcaaatgatcaaatcaa
aacattgtgacgtcataattactgctttcagtttgcgtgttttgaaggTT
TGATGTGTGAAATCTTTTAACctcatgaaaacaaaatatgcCTTGTCTCT
Gagaacaaaatttctaaaaggcttttgttgttctgtaaatatttcttttt
ggattaagaaataccatcttttattgttctaatgattataatatttattt
ctaatatgctttgttgtctttttaatcattctgtaaacttgcatatgttt
tgcatactttacaactaaatccaaccatggctttttcgttcctgtatttt
tgcatacaattcaagatggcggatggaaaggcgaaaaggtctattataca
ATGATTATAGTTTGATCGCagttcgattaattcgattgaAGTGCGATTTG
TTCGATTAAATCAATTTATACCTTATcgcccaattttttatttatattcc
gaGAGCGTATTGGTGGAAATgataaaagaacccggtttcctttagAATCT
AATGTGACCACCATACTGGTCATCGCGTCGTGCAGCCTCTTAGCGCCTAT
AGCGtgtgttttttataaataagGCGAAACCAGGCTAAGTGTGTGCGCCA
ATTATTTTTATCGcatgacttgaagcgtaataaagttttaaaattttaat
gatggacgttgtaaaattttaatgatggataCAAGAAGGagaaagtttgc
atgcgtttcttcttttttgattgaaaggattgcaatgtttactgaacttc
tagtttgatggatgaacttgtttgataaaaatgattccaagaatttcatt
ccaggtttgttttgattattttacagatccggtgtcgactcGAACTAAAT
CGAAGTTatgaagaaattttcgtaaagtttGATAGCTGTTTAattgggtt
cggtaatcgaacagctattgtTCGATTTTGTTCAATGATTCAATTACAAC
AATAATAATTACGATTAAAAATTGGTTCGATAGGTTTCTGTTGACACAGC
CTGGACATCCAGCGAATTGCAATATTATGGCCACAATGACCAAGACTTGT
ATTCGCATTGTCTGACCAACTTCTTAATTTTCTGAGTATTTTGAGTCGGG
AAGTTACAGTATAATGAAGAGccattaattttaaatttccaaTATATTTA
AATTCTACCCGACccatattttgaaatcttttttttttgacgacCATCCA
ACTCATTTTGTTTTACCAAAAAATGATGCGAACAGaagttatttgtgatt
gtggcctatataccttaagtggataactTTTCGCGTGGATCAATTTTTGt
ggttttcgcgaattttggcaatttttgcaaACATTTTGAAGCCCTTTGAT
TTGCGAAGATTAGTCCATGCGAAATTATTTAGAACTTTACAAtcacaaaa
ataaaagtttgcGAAATCTAGATAACATGTTACAATCAATACATATTACT
AGTTTAATTCTTCATTTCAATTATAAACTCTAGTAACCTCCTAAAAGTAC
TTTCTTTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaa
ttatcaaaaacataattctcaagcaatttcatccatataaaaccatttca
aacatcaaaatttaaccatgtgcttttatcgatctttcgcagtttgcgtc
gtgtataacgcagaccagaaaatttaaaaccatattaaacgtataacagg
tatattacatattgtaatgttatatgatagttacatataataaaactcat
cgctctaaaactaccttctcagagaactcacgagcttctgattggtgtaa
ttttatatccagccatattgttatcatcacattcggtatgctaaatattt
ttgttgtttttctcttgtaagacatgatattttgtgattctgacaacatt
tttgtcaaaaattgtcattaagtcattaaaataacaattgaatgattaat
tagtttcatccttctaaaaccactctcttagggacctcacaagcttctga
ttggtgccgttttatatctattcacactatcaacatcacattctgtataa
taaatatttttcgtgtttttgtcttgttaggcatcatattttatgacttt
gtcattatttttgtaagtaagtgtcactaggttgttattttattcaattg
tcattttataatatctaaataacatgtattacttttttgtaatttaatgc
gttatgtattgatgtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtatatgttatgatcttattatct
tttttccggtctgcactttgttgacctgtgacctgtgacctgttgacctg
tgacctgtgacctgcgtttcgaactagccggaaGTTTTTTGTGATTGTGG
CCtatataccttaagtggataactTTTCGCGTGGATCAATTTTTGTggtt
tttgcgaattttggcaatttttgcaaACATTTTGAAGCCCTTTGATTTGG
GAAGATTAGTCCATGCAAAATTATTTAGAACTTTACAAtcacaaaaataa
aagtttgcGAAATCTAGATAACATGTTACAATCAATACATATTACTAGTT
TAATTCTTCATTTCAATTATAAACTCTAGTAACCTCCTAAAAGtactttc
tttgaaattttttgaaagcttttgagtGACGTTGTCTGCctttgttcgat
taaaaaacaaatctcttttctaGTTACAATTTATAAAGTCGCGAAATTCA
ATccacctgaaaattttcaaaaccctTGGTTAGCAAAATTTAATCTACGT
CAAAATTTTAAGACCCTTGGTCCGCAcgaaatctttaaattcttgtctcg
cgaaaattagtatacgcgaaaatttatccacttcaGGTACAAGAAACAgc
aagaaacagaattcaagattcaaggagaaaataGGCaatttttgtataat
aaataatTGATTTATCATATCTTTAGCTAAAatgcacagacaaaatattt
tttccgtatacTGTATCAGATTCTTTGATACCCGTTTAAGCCTTGTAGTA
TACGGCAATTGAGGAGATTCCCTGACTGATATCACATACATTTTAGTAAT
TGTGTGAAATACAGAATTGCAGGTGTTTTGAACCTTGCCAGTAAGCTACG
TCTACAGTAAGCTACTGTAGGAGTACTCTCtattcttgaaataaaaaaca
agtaTCATCACAACTCATTGTTGGTGCATTTTTATGTAAACAAAACTTGA
GTTCATATTTTTGTCTGATTGTATGTTTGATGGCTTTTTGAAAGGAACTT
GTGTTCAAGAGTAGCTTTtttaaaagctatttcaaatttttgctttcagA
TCACTCAATGTAACCCTCAATGTAAATATAATTCGGATATAATCAAAGAA
TgaatgactaatttttcataggAATGTTTCATTATCAAATGTACTCTACA
ACAATGGGGAAAGCATTGAGCACAGTCATCTGTGAGTATAACCTTTTTAA
ACTGAAATTATTACTATACATTTTTTAATGGAACTGCTGTAAACAACGTC
ACTTGTCAGAGCtaaatgaatttaattttttttctagctattttcattga
aaaagtaGGAATTCTGGCCCAAATACTTTTAAAAGGCTTTTTCGTGAAGG
TGAATGCCTCTTTATTAAGAATTCTTAAcaaattgcaaaagtttatgctt
gtattctcaaattcaaacttttttaaatcaaaatttaaaatgtcccTAGT
AGTAAAATCAATCATTGCCTTAATTTTAAGACtgacatttttaaacattt
tttagaaCTGCTGAGAGTGAAAGAACATTGACTGAGAGTGAAAGAACATT
GACTGAGAGTGAAAGAACATTGACAGCATTAAACTTGTCAATACACGATG
AAGGAAAAATGAGTGGGTTTTTACAGAAATGGCAATGAACGTGTCAAGGA
AATTTATTCAGACAGACAGAGGGAATCAGCATCAAGTGATGAAGAAAAAT
TTGCACTAAATGTAGCATCCTTGATGGTGGACAAATAAGTGACTGATAAT
GAATATGACAAGGATATTGATACATACACAGATACTGAAACAGAATCGGA
AAGTTCAAGTGATGAAGAAGAATCTGATACGGATCAAATTGAATATATTG
GGTATGTTTTGCTTACTTTTTCTTGATTATAATATACAATCTGTTTTTCC
ACTGGTTCTCAACTTcaattgagctagaatctgagaatgtacGTCTGTTA
GTCAGTCAGTATGTCACCTCAATAAAACTTTTGGACagactggagacttc
aaaaatggtcagatttggctaNCTTTTTCGTGAAGGTAAATGCCTCTTTA
TTAAGAATTCTTAAcaaattgcaaaagtttatgcttgtattctcaaattc
aaatttttttaaatcaaaatttaaaatgtccctttagtaccttaagtgga
taaattttggcggggattaaatttggagaatttggcgaattttgcNgatg
tttttgaaaatttacaattaTGTAAGCAACAACACAATGGccttactttt
ttctttctttgattggatATGTGACAAAATTATGTAAAGTCGTTTAACCT
TTTCCGGcagatttcttttttatcattgttgcagaaatctttgaaaatcg
gGAACTTTTTAACTGCAATTATGTATGAGaccatttgatttgatttgttc
TGAACTAACCATGAACCTCTGTCAGCAGAGGTGCTAAAAACTTGGTCTTG
CAGGTCTGATagtattatcttttttctggaCCTGGTTAGCTCGNgccaaa
ttaaatccccgccaaatttaacaaaaagagaattatgtgaaagATCACAA
cgttttagaatatttttgattaattttcacTCATTtagtgtgacaaaatt
tccaattcgccaaattaaattcccgccaaattttacaaaattgatctatc
cccaaattaaatccccaccaaaaatcatattttggcaaatcgccaaatta
aatccacgccaaaatttatccacttaaggtagtaaAATCAATTATTGCCT
TAATTTTAAGACtgacatttttaaacattttttagaaCTGCTGATAGTGA
AAGAACATTGACTGAGAGTGAAAGAACATTGACAGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039741-exon-sc0002188-1491911889:27..185 | TCONS_00039741-exon-sc0002188-1491911889:27..185 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1510915933:27..185 | TCONS_00039741-exon-sc0002188-1510915933:27..185 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1575043694:27..185 | TCONS_00039741-exon-sc0002188-1575043694:27..185 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1491911889:5148..5207 | TCONS_00039741-exon-sc0002188-1491911889:5148..5207 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1510915933:5148..5207 | TCONS_00039741-exon-sc0002188-1510915933:5148..5207 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1575043694:5148..5207 | TCONS_00039741-exon-sc0002188-1575043694:5148..5207 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1491911889:6812..6867 | TCONS_00039741-exon-sc0002188-1491911889:6812..6867 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1510915933:6812..6867 | TCONS_00039741-exon-sc0002188-1510915933:6812..6867 | Clytia hemisphaerica | exon |
| TCONS_00039741-exon-sc0002188-1575043694:6812..6867 | TCONS_00039741-exon-sc0002188-1575043694:6812..6867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002188 | supercontig | sc0002188:27..6867 + |
Blast
The following BLAST results are available for this feature:
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