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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039724 ID=TCONS_00039724|Name=TCONS_00039724|organism=Clytia hemisphaerica|type=transcript|length=671bp
TATAGAAAAGAAAACGACGAATGACAAACGAATTGTTTGACGAAGTTTCT
AAACGATTGTATTTATTAGACGGGGGTGCTACTCTAGTATTTACCATCGA
TTCTACTACTTCAATGTATTTGGATATTGGTATAGCAAAAAATATTGCAA
CCCAAATCTTGGATCTGGATAGAGAAAATTCAGTTGATTATATGTTGGCT
GACATCAACGACCCAGCTGGATTAATCAGTGACACTATTGTCCGACCGCC
TACAGAAGAAGGCCTTATGCAGTTTAGAGATGATATAGGAAACATCAACC
TAAAAGGTGGTGGTACTGATTGTCCAGAGCTGTCATTCACTGGAATGTTA
AAAGCATTCGATTTTTTCCCTAATTTCGGAAGTAGTATGTTTGTATTCAC
TGATGCAAGTCCAAAAGATGGAACAGATGCCAATATCGCGACACTCATCA
ATGCAGCACAAGGATTAGAtacgaaaatttcttttttcactgTATCAAAC
ATAAGATGTACAATTGGTGGAAGTATACCATCGGATTATTCTAAATTTGA
AGAAGTAGCTGCAGCAACTGGAGGTTTTGTATTTCCACTCGTTGATGGAC
CTTTACCACCAGGTAAACGTAAAAGACGGAGTGCAGGAGCTTCAGACCGC
TTACCGTTCATAACATCAGAN Run BLAST on NCBI protein sequence of TCONS_00039724-protein >TCONS_00039724-protein ID=TCONS_00039724-protein|Name=TCONS_00039724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MTNELFDEVSKRLYLLDGGATLVFTIDSTTSMYLDIGIAKNIATQILDLD
RENSVDYMLADINDPAGLISDTIVRPPTEEGLMQFRDDIGNINLKGGGTD
CPELSFTGMLKAFDFFPNFGSSMFVFTDASPKDGTDANIATLINAAQGLD
TKISFFTVSNIRCTIGGSIPSDYSKFEEVAAATGGFVFPLVDGPLPPGKR
KRRSAGASDRLPFITSX Run BLAST on NCBI transcript from alignment at sc0002181:21371..22444+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039724 ID=TCONS_00039724|Name=TCONS_00039724|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0002181:21371..22444+ (Clytia hemisphaerica)
TATAGAAAAGAAAACGACGAATGACAAACGAATTGTTTGACGAAGTTTCT
AAACGATTGTATTTATTAGACGGGGGTGCTACTCTAGTATTTACCATCGA
TTCTACTACTTCAATGTATTTGGATATTGGTATAGCAAAAAATATTGCAA
CCCAAATCTTGGATCTGGATAGAGAAAATTCAGTTGATTATATGTTGGCT
GACATCAACGACCCAGGTATGCAGTATTCTGGAGTCCTTGCAGTTACCTT
TAAAAAGCCATCGGTTAAAGTTTTGTGTATGATCCTTTAGAAGAACTCTC
TTTTACCCCTCTTTTCAATAAACATCTCTCCCaattttcaaaagcttttg
tACTATATAATAAATAGCATGCCAATCGAAACTTGGTtaattaaaaagtt
gaataattgtttaaaagaaaattccATTTCTTGCTCTTTTAGCTGGATTA
ATCAGTGACACTATTGTCCGACCGCCTACAGAAGAAGGCCTTATGCAGTT
TAGAGATGATATAGGAAACATCAACCTAAAAGGTGGTGGTACTGATTGTC
CAGAGCTGTCATTCACTGGAATGTTAAAAGCATTCGATTTTTTCCCTAAT
TTCGGAAGTAGTATGTTTGTATTCACTGATGCAAGTCCAAAAGATGGAAC
AGATGCCAATATCGCGACACTCATCAATGCAGCACAAGGATTAGAtacga
aaatttcttttttcactgTATCAAACATAAGATGTACAATTGGTGGAAGT
ATACCATCGGATTATTCTAAATTTGAAGAAGTAGCTGCAGCAACTGGAGG
TAAAATATTATTAAATCCATTTAGTGAAAGAAAATTACTTCTTATCATGG
AGATCGAATTATCTAATATAAATCAAATTGAACTGTTAACAATCTCTTAT
TTAAATAAGAATAaataatattcttataaaaactttatacCTAGAAGAAT
TAGCTACAATTCCTCTTTTACTTTAGGTTTTGTATTTCCACTCGTTGATG
GACCTTTACCACCAGGTAAACGTAAAAGACGGAGTGCAGGAGCTTCAGAC
CGCTTACCGTTCATAACATCAGAN Coding sequence (CDS) from alignment at sc0002181:21371..22444+ >TCONS_00039724 ID=TCONS_00039724|Name=TCONS_00039724|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0002181:21371..22444+ (Clytia hemisphaerica)
ATGACAAACGAATTGTTTGACGAAGTTTCTAAACGATTGTATTTATTAGA
CGGGGGTGCTACTCTAGTATTTACCATCGATTCTACTACTTCAATGTATT
TGGATATTGGTATAGCAAAAAATATTGCAACCCAAATCTTGGATCTGGAT
AGAGAAAATTCAGTTGATTATATGTTGGCTGACATCAACGACCCAGCTGG
ATTAATCAGTGACACTATTGTCCGACCGCCTACAGAAGAAGGCCTTATGC
AGTTTAGAGATGATATAGGAAACATCAACCTAAAAGGTGGTGGTACTGAT
TGTCCAGAGCTGTCATTCACTGGAATGTTAAAAGCATTCGATTTTTTCCC
TAATTTCGGAAGTAGTATGTTTGTATTCACTGATGCAAGTCCAAAAGATG
GAACAGATGCCAATATCGCGACACTCATCAATGCAGCACAAGGATTAGAt
acgaaaatttcttttttcactgTATCAAACATAAGATGTACAATTGGTGG
AAGTATACCATCGGATTATTCTAAATTTGAAGAAGTAGCTGCAGCAACTG
GAGGTTTTGTATTTCCACTCGTTGATGGACCTTTACCACCAGGTAAACGT
AAAAGACGGAGTGCAGGAGCTTCAGACCGCTTACCGTTCATAACATCAGA
NATGACAAACGAATTGTTTGACGAAGTTTCTAAACGATTGTATTTATTAG
ACGGGGGTGCTACTCTAGTATTTACCATCGATTCTACTACTTCAATGTAT
TTGGATATTGGTATAGCAAAAAATATTGCAACCCAAATCTTGGATCTGGA
TAGAGAAAATTCAGTTGATTATATGTTGGCTGACATCAACGACCCAGCTG
GATTAATCAGTGACACTATTGTCCGACCGCCTACAGAAGAAGGCCTTATG
CAGTTTAGAGATGATATAGGAAACATCAACCTAAAAGGTGGTGGTACTGA
TTGTCCAGAGCTGTCATTCACTGGAATGTTAAAAGCATTCGATTTTTTCC
CTAATTTCGGAAGTAGTATGTTTGTATTCACTGATGCAAGTCCAAAAGAT
GGAACAGATGCCAATATCGCGACACTCATCAATGCAGCACAAGGATTAGA
tacgaaaatttcttttttcactgTATCAAACATAAGATGTACAATTGGTG
GAAGTATACCATCGGATTATTCTAAATTTGAAGAAGTAGCTGCAGCAACT
GGAGGTTTTGTATTTCCACTCGTTGATGGACCTTTACCACCAGGTAAACG
TAAAAGACGGAGTGCAGGAGCTTCAGACCGCTTACCGTTCATAACATCAG
ANATGACAAACGAATTGTTTGACGAAGTTTCTAAACGATTGTATTTATTA
GACGGGGGTGCTACTCTAGTATTTACCATCGATTCTACTACTTCAATGTA
TTTGGATATTGGTATAGCAAAAAATATTGCAACCCAAATCTTGGATCTGG
ATAGAGAAAATTCAGTTGATTATATGTTGGCTGACATCAACGACCCAGCT
GGATTAATCAGTGACACTATTGTCCGACCGCCTACAGAAGAAGGCCTTAT
GCAGTTTAGAGATGATATAGGAAACATCAACCTAAAAGGTGGTGGTACTG
ATTGTCCAGAGCTGTCATTCACTGGAATGTTAAAAGCATTCGATTTTTTC
CCTAATTTCGGAAGTAGTATGTTTGTATTCACTGATGCAAGTCCAAAAGA
TGGAACAGATGCCAATATCGCGACACTCATCAATGCAGCACAAGGATTAG
AtacgaaaatttcttttttcactgTATCAAACATAAGATGTACAATTGGT
GGAAGTATACCATCGGATTATTCTAAATTTGAAGAAGTAGCTGCAGCAAC
TGGAGGTTTTGTATTTCCACTCGTTGATGGACCTTTACCACCAGGTAAAC
GTAAAAGACGGAGTGCAGGAGCTTCAGACCGCTTACCGTTCATAACATCA
GAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039724-exon-sc0002181-1491911889:21371..21586 | TCONS_00039724-exon-sc0002181-1491911889:21371..21586 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1510915933:21371..21586 | TCONS_00039724-exon-sc0002181-1510915933:21371..21586 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1575043694:21371..21586 | TCONS_00039724-exon-sc0002181-1575043694:21371..21586 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1491911889:21813..22169 | TCONS_00039724-exon-sc0002181-1491911889:21813..22169 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1510915933:21813..22169 | TCONS_00039724-exon-sc0002181-1510915933:21813..22169 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1575043694:21813..22169 | TCONS_00039724-exon-sc0002181-1575043694:21813..22169 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1491911889:22347..22444 | TCONS_00039724-exon-sc0002181-1491911889:22347..22444 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1510915933:22347..22444 | TCONS_00039724-exon-sc0002181-1510915933:22347..22444 | Clytia hemisphaerica | exon |
| TCONS_00039724-exon-sc0002181-1575043694:22347..22444 | TCONS_00039724-exon-sc0002181-1575043694:22347..22444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002181 | supercontig | sc0002181:21371..22444 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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