TCONS_00039719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039719
Unique NameTCONS_00039719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039719 ID=TCONS_00039719|Name=TCONS_00039719|organism=Clytia hemisphaerica|type=transcript|length=252bp
CAAAGACTGGCTATGTTTTTTCCAGTAGAAAGCTTATAAATATCATGGAA
AGCTCCCGAAAGAAATGTCCATCTTGTCCACAAATTGTATCCAAGAAAAA
TTACGAACGGCACTTATCGTACTGTAATGCGAGGAAAAGAAAGCAAGAAG
ATCAATTGTTGTTGTTGGATGATCTAGGTGATGAATCAGACTTGAAGCGG
TTTAGAATTGATGATAACCCTGATTCAGACTCTGAAAATGTGTATGCTAA
TA
Run BLAST on NCBI

transcript from alignment at sc0002178:11467..14035-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039719 ID=TCONS_00039719|Name=TCONS_00039719|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at sc0002178:11467..14035- (Clytia hemisphaerica)
CAAAGACTGGCTATGTTTTTTCCAGTAGAAAGCTTATAAATATCATGGAA
AGGTAAGTTAATTTGATTTCATTCTTCAGTTCAATGAAGCCCTGAAAGTC
TTTGTTGTTCTTTGTTTTTTAAGTAATAAAAAGCTATTTTTTGTTGATGT
TGATGAAAGTAAAGTAAAGTACTTTAAGAGAAAATCATTCTATGTATGCA
AGAGTAAGTGTTTACTTAAGTGGTAAATACAAAATATACAAGTATTGATT
AATGCTGAATTATGTGGTGGCTTAATTGATTATGCAAAATGATGTTGTCT
TTGAAAAAAGGTCTATAATGGTAATCACCCAGAATCTTTCCTTTCGGGGT
GTTATCCCCTAGGTGCCGACGCACCGGACTGTCCGGTGTATTTGTCCGGT
GGCAAAAAGTATCCTTTCGCTACACCGGATGCAAGTCCGGTGTCAGTCCG
GTGTTGCATACAGGGAATTTTAGACGCCAGACATTTACGAAACAAAGAAT
TAAGAAACACCGGTGACCGGACGCACCGGACTGGTCATGTCCGGTTTTTG
ATTGTCCGGTGGAAAAAAATATCCTTCTCCGACACCGGACATCCGACTTC
CTTAAGTCTGGTGTAGAGATTTCCGGTGGTAAACAAAATTCTCATTTTAC
ACCGGACTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGTGCGTCGGCAGGG
TCCTCATCCCCTCCCCTGGGCTGGGTGGCTCAAATTTATTTATTAAAAAT
GCCTAGATCTTCATTGTTCAACTTACTTTCATTCTTTTTCAGAGCATTTT
TATCTGTTAAAAATTTCGGATGAGTCTGGGCGCTTCCCAGGCGGAATCCG
TTACGGTATGTTTTTTATTTTGTCTAGTAGCGTCAACGGATCTAACTTGG
GACAGTCTGACAAAACATGGGACAACAATTCGGCCACCATTTCACCGAAC
CTCCAAAGTCATTTAATTTAAATAATTTGAAAAATTTGAAAAACTGCGAA
TATGGCGAATCAAAACAGACTTGTTTTCAACAGAGATTTAAAACAGTAAG
TAAAAATACAGTCCAGAAATCAACCATCCCATGTTATGACCACTCGTCCC
AAGTTAGACTTGTTGATGGTAAGAGCAAAATTAAAGATATTTGACTTATA
ACTTGGTATTTTATTCATTTTGCAGCTCCCGAAAGAAATGTCCATCTTGT
CCACAAACTGTATCCAAGAAAAATTACGAACGGCACTTATCGTACTGTAA
TGCGAGGAAAAGAAAGCAAGAAGATCAATTGTTGTTGTTGGATGATCTAN
AGGTCTATTTATCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGATGCA
ATAAGTCCGGTGTCAGTCCGGTGTTGCATACAGGGAATTTTAGACGCCAG
ACATTTGCGAAACAAAGAATTAAGAAACACCGGTGACCGGACGCACCAGA
CTGGTCATGTCCGGTGTTTTGATTGTCCGGTGGAAAAAAATATCCTTCTC
CAACACCGGACATCCGACTTCCTTAAGTCCAGTGTAGATTTCCGGTGGTA
AACAAAATTCTCATTTTACACCGGACCTTCGCATGTCCGGTGTTCGTTAA
GTCCGGTGCGTCGCCAGGGTCCTCATCCCCTCCTCCTTCGTCGTTCGACT
TACTTTCATTCTTTTTCAGAGCATTTTTATCTGTTAAAAATTTCGGATGA
GTCTGGGCGCTTCCCAGGCGGAATCCGTTATGGTATGAGGACCCTGCCGA
CGCACCGGACTGTCCGGTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCG
CTACACCGGACGCAATAAGGGTCCTCCTCCCCTCCTCCTTCGTCGTTCGA
CTTACTTTCATCCTTTCATCCATCGCCGGACATTTATGAAACAAAAAATT
AAGAAACATCGGACTGGTCATGTCCGGTGTTTTGATTGTCCGGTGGGAAA
AATATCCTTCTCCGACACCGGACATCCGACTTCCTTAAGTCCGGTGTAGA
AATTGTCCGGTGGTAAAAAAAATTCTCTTTTACACCGGATTTTCGCGTGT
CCGATGTTCCTATAAGTCCGGTGCGTCGGCAGGGTCCTATGGTATGTTTT
TTATTTTGTCTAGTAGCGTCAAGGATCTAACTTGGGACAGTTTGACAAAA
CACGGGGCCACCATTTCACCGAACCTCTAAAGTCATTTAATTTAAATAAT
TTGAAAAACTGCGAATGGCGAATCAAAACAGATTTAACAGTAAGTAAAAA
TACAGTCCAGAAATCAACCATCCCATGTTATGACCACTCGTCCCAAGTTA
GAGCTGTTGATGGTAAGAGCAAAATTAAAGATATTTGACTTATAACTTGG
TATTTTATTCATTTTGCAGCTCCCGAAAGAAATGTCCATCTTGTCCACAA
ATTGTATCCAAGAAAAATTACGAACGGCACTTATCGTACTGTAATGCGAG
GAAAAGAAAGCAAGAAGATCAATTGTTGTTGTTGGATGATCTAGGTGATG
AATCAGACTTGAAGCGGTTTAGAATTGATGATAACCCTGATTCAGACTCT
GAAAATGTGTATGCTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024019XLOC_024019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039719-exon-sc0002178-1575043694:13984..14035TCONS_00039719-exon-sc0002178-1575043694:13984..14035Clytia hemisphaericaexon
TCONS_00039719-exon-sc0002178-1575043694:11467..11666TCONS_00039719-exon-sc0002178-1575043694:11467..11666Clytia hemisphaericaexon
TCONS_00039719-exon-sc0002178-1510915933:13984..14035TCONS_00039719-exon-sc0002178-1510915933:13984..14035Clytia hemisphaericaexon
TCONS_00039719-exon-sc0002178-1510915933:11467..11666TCONS_00039719-exon-sc0002178-1510915933:11467..11666Clytia hemisphaericaexon
TCONS_00039719-exon-sc0002178-1491911889:13984..14035TCONS_00039719-exon-sc0002178-1491911889:13984..14035Clytia hemisphaericaexon
TCONS_00039719-exon-sc0002178-1491911889:11467..11666TCONS_00039719-exon-sc0002178-1491911889:11467..11666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002178supercontigsc0002178:11467..14035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742833	0.724379	0	0	5.00876	3.16639	6.68521	2.68226	2.50389	4.6522	10.5363	2.47361	2.47018	1.02612	3.79625	5.43194	0.557642	8.00191	0.789648	3.30524	5.02749	3.15287	0.851718	1.54867	5.58283	7.11792	4.07429	5.43524	0.824487	2.52007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top