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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039711 ID=TCONS_00039711|Name=TCONS_00039711|organism=Clytia hemisphaerica|type=transcript|length=368bp
CTCGGATATTTTCTTCGCCCACGAATATGCCCATACAACATTAAAACCGC
AAATGATTGCGCTCGCTTCGCTGTGGCCATGGAAAGCTAAAATGGTAGCC
TCAGCTGCCCGAGGTTGTGAAAAGCGGTGAAAAGCTGTTCACCCTTTAGC
TGGGTTCAGTCCTTTtgtgtgttttattatatggatAGAGCTCTTCCTCT
CCTAAAGGAAGAAATGTAAGGCATGATGTACTGTACCAACGAACGAAATT
AACCTTCCATCAAGCAGTCAAGGATGGGGCTGACATACAATACAGCTACA
CAGCACAGCAGTAGGAGCTCGTTTGATTATTTTGTATTATGGACCCATAA
ATAAACTGTATTTCAAAG Run BLAST on NCBI transcript from alignment at sc0002175:24404..26960+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039711 ID=TCONS_00039711|Name=TCONS_00039711|organism=Clytia hemisphaerica|type=transcript|length=2557bp|location=Sequence derived from alignment at sc0002175:24404..26960+ (Clytia hemisphaerica)
CTCGGATATTTTCTTCGCCCACGAATATGCCCATACAACATTAAAACCGC
AAATGATTGCGCTCGCTTCGCTGTGGCCATGGAAAGCTAAAATGGTAGCC
TCAGCTGCCCGAGGTTGTGAAAAGCGGTGAAAAGCTGTTCACCCTTTAGC
TGGGTTCAGTCCTTTtgtgtgttttattatatggatAGAGCTCTTCCTCT
CCTAAAGGAAGAAATGTAAGGCATGATGTACTGTACCAACGAACGAAATT
AACCTTCCATCAAGCAGTCAAGGATGGGGCTGACATACAATACAGCTACA
CAGCACAGCAGGTAAGATTCTCACTCAGCAACTAAGCACTATTATGCTTA
CTTTTTGATATGCTCTTACTATTTACACTACTATTATAATAGGTAGACTA
GACCAGACTCTCCCACTCAATACAATTGATAAGTTTTTTCAATCAAAGAC
CAATCTATAACCAATTAAGGATTGGATAATATCGAATTAATTGATTCCCA
TTATCGATAAAAGCAATGATGCGATGGATGGACAGATCCCACGGTCCTAG
ACCAGTCTGGAAAGAAGAGAAAATTTACGCCAGAGATTTCTTGGCGTAGC
CTTTGTGTAAGCCTATGAAATTCAAAGTCTGTGACGGAGATATCCGGCGT
ACATGCCTTACTTTCCAGATTGGGTCCTAGGTCACTTGTTAGGACAGTTA
CACTTTGGCAGACAGCTCAGTTGTTCAACATATTAGCAAAATTGTGGAAC
AACTGGGCTGTCGACTAACTGGGACTTCCAAGTTGGTCGATGCTTACTTG
TTCGACATCCCAGTTGTTCGATAATATATCGACATAATAAAAGTCGAATA
ACTGGGATCGAACAACCATACGATCAGTTGCTCGACAATGTAATTGCCTG
ACAAtacagttgttcgacaatacaATACATAATTATGTATTGACGAACAA
CTGGGATTTTGAACAACTGGGAAGTCTGACAACTGATCTTCCCACGCACG
ACAATATATTTGGCCGACAATTTTCATGATTTGTCGACCAAatgtattgt
cgaacaagtgtaCTGTCGAACAAGTACGAAATCTCTGATCTCACAGATGG
ACTGGATTTTAAGAGGGTTTAAGAGTTTGGTAACTTGCATGAGTGGAGGg
gaaatgacctggctggtcattaaaatccaaagttaaatcaaaacaaaatg
gtagagcTAGCAGATCTGCGAGCGGAGCTGTATGGTTCTTTtttttgctg
ctttggttggtTAGTCATTCAATGGCTATGCAGAAAAGTTTATCTCCTAT
CTATCTACCATGAAATCGGGTAACTAGCATCAGTTGAGACAAACATGCAT
AATAGCCCGATCAAATGAAttacctgtctggtcattaaaatacaaggcta
aataaaaataaaaatggtataTAGAGTAGatctgcgagcggagctgcgta
gttcatttgtttNATTAAAATACAAggctaaataaaaataaaaatggtat
aTAGAGTAGatctgcgagcggagctgcgtcgTTCATTTGCTTTGAagttt
tgctgctttgattggtcagtcatcagcagtcatttgatggctatgcaagt
tttacctccactgatgcaagttacccgacctCACGGTACTGTGTACTAGA
CTAGTAGTCACATATCTGTATTACAAGGCAGAGCAAGCAGTGTGTGAGTG
TGGCAGCTCAAACCTACTGTACTGTGTAGCTAGCCCATCAGCAGCATTTT
GGTAGCAACCAACATATCATTTTGACCATTGGGGTTCTACCTCCCAGACT
ACTACTGTTGCTGGGGGGATAGCTAAAATTTCTCATTCCTGGTGAAATTT
TCTTTGCCACTTTTACAATAATACAGCTAAGAGATTGAATGAGAATGTCC
TAATCAATACAACCTATAACTTCTTCCTAATCCAATTTGATTCGATTGCc
tattattgattgattgattgattaaaaATTGACTCTTAACCAAATAGATG
GAGCAATATCATAGACAGTCGATATTTTTCAGGACTGAGAAGACTCGATT
CGATTTGATTGCCTATTGTTGAttaattgattaattgattaattaattga
ttaaaaatttactcttAAAAATGCATGATCAAAATGGTCACAATGAAAAG
GCAACAGAGATTCTTTGTTGTGGTGTTAATTCGAGTCAAGTTAAATTAAA
TAAAGTGATATGGCCTGTGGTATTTCTCTTCATGTTCTCAAAATCCATGC
AAATGAACCCCTCTCACTTATGAAATTGATAACCATTTGTAGGATGTGAC
GTTATGTTGAGTGGAAATTAAAAACTCTACTGATTCTAACTTATTTAAAA
GCATATAGCAATTATACTTTTTGAATAGGGGAATAGGGGAATAGGGGAAG
ACAAATTCATGAATTATGAATGTTTAGAAAATATTGACTTTAAGAGTTTG
ATGATATGAGATGCAGGCTACTAATTAATTTCTTCTTTATCCCTTTTTAG
TAGGAGCTCGTTTGATTATTTTGTATTATGGACCCATAAATAAACTGTAT
TTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039711-exon-sc0002175-1491911889:24404..24714 | TCONS_00039711-exon-sc0002175-1491911889:24404..24714 | Clytia hemisphaerica | exon |
| TCONS_00039711-exon-sc0002175-1510915933:24404..24714 | TCONS_00039711-exon-sc0002175-1510915933:24404..24714 | Clytia hemisphaerica | exon |
| TCONS_00039711-exon-sc0002175-1575043694:24404..24714 | TCONS_00039711-exon-sc0002175-1575043694:24404..24714 | Clytia hemisphaerica | exon |
| TCONS_00039711-exon-sc0002175-1491911889:26904..26960 | TCONS_00039711-exon-sc0002175-1491911889:26904..26960 | Clytia hemisphaerica | exon |
| TCONS_00039711-exon-sc0002175-1510915933:26904..26960 | TCONS_00039711-exon-sc0002175-1510915933:26904..26960 | Clytia hemisphaerica | exon |
| TCONS_00039711-exon-sc0002175-1575043694:26904..26960 | TCONS_00039711-exon-sc0002175-1575043694:26904..26960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002175 | supercontig | sc0002175:24404..26960 + |
Blast
The following BLAST results are available for this feature:
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