TCONS_00039708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039708
Unique NameTCONS_00039708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039708 ID=TCONS_00039708|Name=TCONS_00039708|organism=Clytia hemisphaerica|type=transcript|length=885bp
TGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAA
GCAAGCTTGGGAAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTT
GGAAAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGC
GGAGTGTTTTGCCTGAAGTTTGCCGAGGCCATGttaaaagaaaaagatct
accAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCGTAAAATTG
CCATTACGTTGATAGAAATTGGAGGTAACGACGACTGGTGTGGTGAAGTT
TGCCGCTTATGTGACAGGACGTCTCCCCCACCGTCGAAACGATTTGGATC
AAATCCGAAAGAATGGGGATGGGTTTGTTGTGACTTCTGCAAACCAGTCA
AGTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTC
AGTGAAATAAGCTATTTTTGCGGAAAGAAACTTGTTCAGGATGAAATCTT
CACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGG
TCCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAG
CCTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGG
TGGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCC
ATGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTC
TCAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACT
TCTTGGTATCGATATGAATACTTTAGACTGATATTGTCTTGTTTTTTAGT
TACATAGTTTTTTAGTGGTTTTTAACAAGTGTATA
Run BLAST on NCBI

transcript from alignment at sc0002174:15235..21056+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039708 ID=TCONS_00039708|Name=TCONS_00039708|organism=Clytia hemisphaerica|type=transcript|length=5822bp|location=Sequence derived from alignment at sc0002174:15235..21056+ (Clytia hemisphaerica)
TGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAA
GCAAGCTTGGGAGTAAGTTCAAATACTGTATATTTTCCTTTAAACCAAGA
TACAGTACTTTATTGTGATTTTTACATTTCCATTTGGATTTTATATCCAA
AACGATTTATATTGACTGATGTATGATTTGTTAGTCCCGAAGAAAATGAT
TTCACCCGTTCATAATACTTTTGCACGAGCTACATCTTAAGGAATGTTAC
TATCCTTTCAATCCTAAAGTTTCCAGAAATTTCTACTAAGAAATATCATT
ATTTCTTCGCTTAAACCTATTTTAATCCTTTTTCACgtgtttttgatttt
atttttctcttctccaTTTGCCCcttttatttagaaaaaataaaattatt
ttactcTAGAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTTGGA
AAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGCGGA
GTGTTTTGCCTGAAGGTGAGTTAGCCTTTATtttaaaatctgtaaaatct
aaatACCAATGGAATGAGCATGAAATTCCTATTAAAATTTAGTTACAAGA
CGTGcctttattatttttctatcaaaagttatgacgaatGAAGGTTTTCT
GATGATGTCATCACAAGCCCTTCCAGGCAAAACTAAAAAATAATCCTAGG
ATGCACGATACTAAACTCGAATCTGTAAATTATATGTATAAGGGCCCGTA
TATAAAGGGCTCGCATATCAAGCTGACGATTTCTTTTAAGGTTCGTTCTA
TAGTAAATTTATTCCAAAAAAGCTAAAAGGTGACATGTTTAATTCCCAAA
GATCATGACAGCAGAATAACTTGATAAGAAGATTGTAAATATACGAGTTT
AAAATACTTTATAATACTTTTAGCAATTTCTTTACATTAAGATTATTCGT
CAAGATTTAATAGACAAACAATTTTACGGAGTTTTCCATACCTTTTGTCA
TGGTGTCAATATCTCGTTTCTATATTTCATTAGTTTGCCGAGGCCATGtt
aaaagaaaaagatctaccAACAAAACTTCCCCCAAAAGAGCTCCGTGATT
ACCGTCGTAAAATTGCCATTACGTTGATAGAAATTGGAGGTATGACTATT
TATTATCATCTTTCTAATTTTACTATATTTTAGTCTAAGACAAAGTCACT
AACTCAAGATCATTCCAAGCTGGAATCAAACTTCGGGCGGCTTTTTGGAG
GAAATTTTTAGTCACCCGATAGATTCAGAAAGTCTTTATATCACTCAGCC
TTATAGCCAACTATTTCTCCGTAAACTATAAATTACGTTTTTTATACAAA
TATGATATAACATGATAAACgttgtttcaaaaatattggCAGTCTGCACA
TATCGGTTAGTTGCTCTCAAAGGAAAGAAAGATACAATTAAAAGTAACaa
ctcgttgaaaagataattggtaacttggccaaaatatttttctgacgCTT
TGAACNCATATCAAGCTGACGATTTCTTTTAAGGTTCGTTCTATAGTAAA
TTTATTCCAAAAAAGCTAAAAAGCGACATGTTTAATTCCCAAAGATCGCG
ACAGCAGAATAACTTGATAAGAAGATTGTAAATATACGAGTTTAAAATAC
TTTATAATACTTTGAGCAATTTCTTTACATTAAGATTATTCGTCAAGATT
TAATAGACAAACAATTTTACGGAGTTTTCCATACCTTTTGTCATGGTGTC
AATATCTTGTTTCTATATTTAATTAGTTTGCCGAGGCCATGTTAAAAGAA
GAAGATTTACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCG
TAAAATTGCCATTACGTTGATAGAAATTGGAGGTATGACTATTTATTATC
ATCTTTCTAATTTTACTATCTTTTAGTCTAAGACAAAGTCACTAACTCAA
GATCATTCCAAGCTGGAATCAAACTTCGGGTGGCTTTTTGGAGGAAATTT
TTAGTCACCCGATAGATTCAGAAAGTCTTTATATCACTCAGCCTTATAGC
CAACTACTTCTCCGTAAACTATAAATTACGTTTTTTATACAAATATGATA
TAACATGATAAACgttgtttcaaaaatattggCAGTCCGCACATATCGGT
TAGTTGCTCTCAAAGGAAAGAAAGATACAATTAAAAGTAACaactcgttg
aaaagataattggTAACTTGGCCAACATATTTTTCTGACGCTTTGAACTT
CGCTGATTTAGAATATGTATTCAgatttttcatatctttcttCGATCAAA
AGAAACGTTCGTACAGGCCTCCGAAGTTGGTCCATTTTGCCTCTGTTGGC
CCGTTTTTGACCATTCTAAGCCTACTTTGGAGGCctgaactttttttttg
aagaaagatatgaaaaatTGGTAGACATACCCAGAGAAGTCCaaagtttc
agaaaaatataaattaagaTATTTTGGCTACTaacaaaaatcttcatttt
ttattttcgaattCAATGAAACCTTTTAAAGCTTTAAACtcagaattatc
ttttcaacgaggtattacttttgattatatattttttccttCAAGAGAAG
TNACCTTTTAAAGCTTTAAACtcagaattatcttttcaacgaggtattac
ttttgattatatatttttttccttcaagagAAAGTAAGCAAAATGTGTGG
GTTGccaattcttttgaaatataCTACTCGATGCCAATAATCATCGTCTA
CTATTAAATCCAATTAAAGTTTGTCAATCCTTTTTTATCAATAACAGTTG
AATTTTCGTACCAGAGAATTTTGGGATTGAGGCAGTCTTCGAATGTCTAT
CAGAACTTGTACAACTCGATATATTTATGTATTGCTATAGGTAACGACGA
CTGGTGTGGTGAAGTTTGCCGCTTATGTGACAGGACGTCTCCCCCACCGT
CGAAACGATTTGGATCAAATCCGAAAGAATGGGGATGGGTAATTATGTGA
TTGATATTTTATAACCTTGAACCGATTCACTACTACTTTGGTCAATAAAC
TTTTGAGTTCCTAAAAAGTAATGCACAGAAGAAACCAAGTGAACAATAAG
TTTAGTCTACGTCAGCTCTCTGAAAGAGCGAGGCCCTTCTGTAATGACac
tttaagttttgaaatcatcatttttgacATAAACTTAAtataaacttaaa
aataaatttcataattGTTTTTTGTGGGATTTTGCCCAAAGATTAAAATT
TGAcataaaatgacttttttgagatttaaccagttttttgtttttctttt
ttcatcaaatttataagaaaattagcAACTAGTGGACCAAAAGCATATCA
TTTAGTGAATTAACTGGAAGTTTTACCACTGAACAATTTCCATTAATCCA
GTCACTGGCACTGACTTCTTTAATCACCCTCACCTAACCTCTGGGTATTT
AAAGCGGTTAACggtttcaagtttttttaagaTAGACTTATGTATGTTTA
TTACCTATCattaaaaatcaccaaaaatccTCAAAGTCTATTCCCGTGTC
CATGTCAAAAATAGAATTTACCGCATTCTGGGATCCACAGCCTGCAAAGT
GATAATCGATTCTTCCCTATAGTGTAAAAAAAACGACCTCTATTCAGGGN
CCGTGTccatgtcaaaaataaaatttaccgCATTCTGGGATCCACAGCCT
GCAAAGTGATAATCGATTCTTCCCTATAGTGTAAACAAAACGACCTCTAT
TCAGGTTATTCTGTTATTTTTCATTAGTTATCTATTTTTCATCATCATAa
ttctatttttgaattttccagGTTTGTTGTGACTTCTGCAAACCAGTCAA
GTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTCA
GTGAAATAAGCTATTTTTGCGGAAAGGTAAGTTTTTGCAATAtcttattt
tagtttaatgtaatGGCCGAGTATAGAATAATTATACCTGTTGCTACTAC
GCTTAGCGTATGAAATTTGACCAGCCACCGTGGTAGTTAATTAGGTCGGT
TCGATACTTTGCTCTtaagaaatgacaaaaaataataatacgaCAGAAGA
CTATATCCTTTTGATTTCCTGTAGTTTTAAAAGCAATTTTCACTCACCCG
ATGAAAGATATAGCTTTTTCAGAATGCGGAATGCGGGtcaaggaaaaaag
ctctcatgtgGTCAGCCGGATAAAactctttttgctttttttgataactt
ataAGATCATTGATGTACAAACAGTacgaagtaagccctgaatactaatg
tatcaactattAACGAAGTCTGTGGCCGGGTCAGCAAAGaatggagagat
tctttgatcttggGAGGTAATCACcgtgaagaaatttcacaaaaataatt
attcaatataaagctatgatacaaagttaataagtgattgaccccaaaaa
aacagcagaaaacagcgtttttagacgtcaatcagcttataactttggtt
gatatcttttgactgaataattatttttgagaaatttttcacagagtgac
gttcgatgatcaaggattcacttcagtgaaaatgatagttatagcacttt
tctacaagattttcatttttttcttcttcattttcaacttcatttttaga
atttctttaaaacattttttatttcaaattgttccactcactaatatctc
ttttcaatgataccaaatttataaagattgaagaattcctttaaaagtta
taggtaaaagaaaaaagagtgcacacttatcgtgaatagactttataatg
attgatttttttcttctctcatTCAGAAACTTGTTCAGGATGAAATCTTC
ACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGGT
CCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAGC
CTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGGT
GGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCCA
TGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTCT
CAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACTT
CTTGGTATCGATATGAATACTTTAGACTGATATTGTCTTGTTTTTTAGTT
ACATAGTTTTTTAGTGGTTTTTAACAAGTGTCTAAACTTAGActtaaact
ttctttttatGACGCTGTATTATATATTTGTATTGTATACCCACtatcat
ttgaatatattttttattttacaaaaactcAATTATCATTGTATTTGAta
gttgaaagaaaaaatttgtatttgAAAGTCACTAACGATTATTCAGATAA
TAGTGAACTGTCccgggtgtccggaaaaaaataatgagtcgaGTCACTTA
TATAGgtagaaagttcttgtgtgtgtttcactaactATACAATGGTTTCA
CTAACTATACAATGTTTAGAGTAGTCAATGTTTATCTCGCTTTTCTATGT
CATTAATTGTCACGAAACATCTTTTACGAATGTCTTTTGCAGAAAACAGT
TCTGAATAAATATAACATCattcagtagcgtggtgggttgACTAAAATTC
GAGCTTTCCGTGGAGGCAATTTCAGAAGATTtagattttggcgcccccta
tgaaaagtaaatatctttttaaagtgtttcaatgttcaaactcgataatT
TTTTTCCGACACCCTGTGTTATATCTTTGTTTTTAGTTACATAGTTTTTT
AGTGGTTTTTAACAAGTGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024011XLOC_024011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039708-exon-sc0002174-1491911889:15235..15296TCONS_00039708-exon-sc0002174-1491911889:15235..15296Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:15235..15296TCONS_00039708-exon-sc0002174-1510915933:15235..15296Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:15235..15296TCONS_00039708-exon-sc0002174-1575043694:15235..15296Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:15644..15749TCONS_00039708-exon-sc0002174-1491911889:15644..15749Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:15644..15749TCONS_00039708-exon-sc0002174-1510915933:15644..15749Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:15644..15749TCONS_00039708-exon-sc0002174-1575043694:15644..15749Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:16268..16373TCONS_00039708-exon-sc0002174-1491911889:16268..16373Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:16268..16373TCONS_00039708-exon-sc0002174-1510915933:16268..16373Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:16268..16373TCONS_00039708-exon-sc0002174-1575043694:16268..16373Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:18125..18222TCONS_00039708-exon-sc0002174-1491911889:18125..18222Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:18125..18222TCONS_00039708-exon-sc0002174-1510915933:18125..18222Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:18125..18222TCONS_00039708-exon-sc0002174-1575043694:18125..18222Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:19056..19160TCONS_00039708-exon-sc0002174-1491911889:19056..19160Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:19056..19160TCONS_00039708-exon-sc0002174-1510915933:19056..19160Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:19056..19160TCONS_00039708-exon-sc0002174-1575043694:19056..19160Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:20061..20436TCONS_00039708-exon-sc0002174-1491911889:20061..20436Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:20061..20436TCONS_00039708-exon-sc0002174-1510915933:20061..20436Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:20061..20436TCONS_00039708-exon-sc0002174-1575043694:20061..20436Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1491911889:21025..21056TCONS_00039708-exon-sc0002174-1491911889:21025..21056Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1510915933:21025..21056TCONS_00039708-exon-sc0002174-1510915933:21025..21056Clytia hemisphaericaexon
TCONS_00039708-exon-sc0002174-1575043694:21025..21056TCONS_00039708-exon-sc0002174-1575043694:21025..21056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002174supercontigsc0002174:15235..21056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0569852	0.0297113	0	0.0353874	0	0.0674737	0.126336	0.0884509	0.109561	0.159513	0.455141	0.224046	0.0906205	0.401577	0.0871702	0.0590969	0.0807632	0	0	0	0.0416781	0.0337768	0.0547075	0.45078	0.276588	0.107945	0	0	0.032034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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