TCONS_00039706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039706
Unique NameTCONS_00039706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039706 ID=TCONS_00039706|Name=TCONS_00039706|organism=Clytia hemisphaerica|type=transcript|length=630bp
TGAGAAACAGGTTAAACATCCCTCACAGCAATCTCTTTCTCGTTGAAGTA
AAAGATCTCTTTCTCGTTGAAGTAATAGATCTTCTTGTTGAAGTAATAGA
GCTCTTTCTTCCAGTTTTTGCCTTCGTTCCTCTAGTTCTCGTTCTCGTTG
ACGCTCTTGCTCTTGCTCTTCTCGTTTTCGTTCTCGTTCTCGTTCTCGTT
CTCGTTCTCGTTCTCGTTCTCGTTCTCGTTCTCGTTCTTCCTCTCCTTGA
ATGGCACCATACATCGGCGTGTTCACATAAACGTTGATATTGTTTTCATG
ATAATGATAATGAATTCCACCATCACCAGCTTGTTGTCTTATCTGAGGGA
GATTCTGTATGTCCTCAATGAGAGGTTCATAATCTCTTATCAAGTTTCGT
GTAATTCTGAAGTTTTGCTGGTTTCCGTTTCCGTTGTTCATTGTTTCTCG
TATTTTCTCTGTCACCCTGTACTCGTGACAACATTAATTTcgtaacaaaa
aaaacaaaaatattcaaatttagaGTACTCAGGAATCCTAGTCGTAAATA
TATGAAACAGCCACATTAACTTATGTTAACGCTCCTTTCACCAAAAGCTC
CACTGGATGCGATTTATTGCTCAAGCCTCG
Run BLAST on NCBI

protein sequence of TCONS_00039706-protein

>TCONS_00039706-protein ID=TCONS_00039706-protein|Name=TCONS_00039706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MNNGNGNQQNFRITRNLIRDYEPLIEDIQNLPQIRQQAGDGGIHYHYHEN
NINVYVNTPMYGAIQGEEERERERERERERERERERERKREEQEQERQRE
RELEERRQKLEERALLLQQEDLLLQRERDLLLQRERDCCEGCLTCFS
Run BLAST on NCBI

transcript from alignment at sc0002172:7804..8433

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039706 ID=TCONS_00039706|Name=TCONS_00039706|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0002172:7804..8433 (Clytia hemisphaerica)
CGAGGCTTGAGCAATAAATCGCATCCAGTGGAGCTTTTGGTGAAAGGAGC
GTTAACATAAGTTAATGTGGCTGTTTCATATATTTACGACTAGGATTCCT
GAGTACtctaaatttgaatatttttgttttttttgttacgAAATTAATGT
TGTCACGAGTACAGGGTGACAGAGAAAATACGAGAAACAATGAACAACGG
AAACGGAAACCAGCAAAACTTCAGAATTACACGAAACTTGATAAGAGATT
ATGAACCTCTCATTGAGGACATACAGAATCTCCCTCAGATAAGACAACAA
GCTGGTGATGGTGGAATTCATTATCATTATCATGAAAACAATATCAACGT
TTATGTGAACACGCCGATGTATGGTGCCATTCAAGGAGAGGAAGAACGAG
AACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAA
CGAAAACGAGAAGAGCAAGAGCAAGAGCGTCAACGAGAACGAGAACTAGA
GGAACGAAGGCAAAAACTGGAAGAAAGAGCTCTATTACTTCAACAAGAAG
ATCTATTACTTCAACGAGAAAGAGATCTTTTACTTCAACGAGAAAGAGAT
TGCTGTGAGGGATGTTTAACCTGTTTCTCA

Coding sequence (CDS) from alignment at sc0002172:7804..8433

>TCONS_00039706 ID=TCONS_00039706|Name=TCONS_00039706|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0002172:7804..8433 (Clytia hemisphaerica)
ATGAACAACGGAAACGGAAACCAGCAAAACTTCAGAATTACACGAAACTT
GATAAGAGATTATGAACCTCTCATTGAGGACATACAGAATCTCCCTCAGA
TAAGACAACAAGCTGGTGATGGTGGAATTCATTATCATTATCATGAAAAC
AATATCAACGTTTATGTGAACACGCCGATGTATGGTGCCATTCAAGGAGA
GGAAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAAC
GAGAACGAGAACGAAAACGAGAAGAGCAAGAGCAAGAGCGTCAACGAGAA
CGAGAACTAGAGGAACGAAGGCAAAAACTGGAAGAAAGAGCTCTATTACT
TCAACAAGAAGATCTATTACTTCAACGAGAAAGAGATCTTTTACTTCAAC
GAGAAAGAGATTGCTGTGAGGGATGTTTAACCTGTTTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024009XLOC_024009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039706-exon-sc0002172-1491911889:7804..8433TCONS_00039706-exon-sc0002172-1491911889:7804..8433Clytia hemisphaericaexon
TCONS_00039706-exon-sc0002172-1510915933:7804..8433TCONS_00039706-exon-sc0002172-1510915933:7804..8433Clytia hemisphaericaexon
TCONS_00039706-exon-sc0002172-1575043694:7804..8433TCONS_00039706-exon-sc0002172-1575043694:7804..8433Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039706-proteinTCONS_00039706-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002172supercontigsc0002172:7804..8433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337081	0.0821767	0.19083	0.0933487	0	0	0	0	0	0	0	0	3.92916	4.03384	0.0170927	0.154056	0.316306	0	2.39707	2.39308	0	0	0.289868	0.0878439	0.33829	0.322995	0.411525	0.493277	0.654733	0.190591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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