TCONS_00039704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039704
Unique NameTCONS_00039704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039704 ID=TCONS_00039704|Name=TCONS_00039704|organism=Clytia hemisphaerica|type=transcript|length=414bp
GGACCATTGGAAAAACACTTGTCCTGCAAAAAcgaattgaggAGTAACTA
AATCCAAAAGAAACAATCGTCTATGGAATAAAGATCAGCCAATTTCTTAC
AGTTCGGTACGTGACGATATCAAGAAGGTGATAAAAGACATAGGTTTGGA
CCAAAAACAATATGGTGTTCATAGTTTGCGCTCGGGCGGAGCGNACCCAT
TTTCGGCTACCGGGGTTATGGAGGTTTTTGCCCGGGGGTAGTCTTGATCT
ATCTAATCCAGTAGAGTTAATCTTTTCgaatgaaaattattaaaggacgg
ttttgttttttctgtttaGTTGCTATAattgtaaagaaaaaatttttatg
aatGATGGTTAGTTTTTAGCAGTTAGAGATAACATAAGAGGTAATTTTTA
TAAACATGGagttt
Run BLAST on NCBI

transcript from alignment at sc0002171:11702..14380-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039704 ID=TCONS_00039704|Name=TCONS_00039704|organism=Clytia hemisphaerica|type=transcript|length=2679bp|location=Sequence derived from alignment at sc0002171:11702..14380- (Clytia hemisphaerica)
GGACCATTGGAAAAACACTTGTCCTGCAAAAACGAATTGGTATGAAAAAT
TTAATTTTCTTAAATCTGAATCAACGGTTAGTTCTCAAACCCTCGAAAAA
GCGTCCACGAATGAGATTAAGGGAAATTTAAGAAGGCATGTAAAATTCTG
GGAAAAAGAGTTGGGGGCGAACGAATTTATTTTGAATGTTATAAAATTTG
GATATAAAATTCCTTTGAGATATATTCCAGGCCCAACAGAGTTCAAAAAC
AATGTGTCTGCCTTAAAAGAATCCCAATTTGTGGAAGAGTCTATCAAAAA
GCTTTTGCAACAGAATTTTATTTTAGAAGTAAAAGAGCCTCCTTACATCA
CAAGCCCGCTATCAGTAGCAAGAAGTTCAATAGGGAAAAGGCGGTTGGTG
CTAGACTTGAGTTTTCTTAATAAATTTGTGTGCAAAGAAAACATAAAATT
TGATGATTGGAAAATTTTCGAGCAATTTATTGAAAGCAATGAACAAGCTT
ATTTTTTCAAGTTCGATTTCAAAAGTGGTTATCACCATATAGAAATCCAC
GATGAATCTCAGAAATACTTAGGTTTTTCTTGGCAATCCGAGGGGGATAA
AAAGAGATATTTCATTTTTCAAGTTTTACCTCTAGGACTAAGGTCGGCAG
CTCATATTTTTACAAAAGTTGTAAGGGTTTTGATAAAACACTGGCGGTCT
AGTGCCTTAAAAATTGCCTGTTTTATTGATGATGGCCTCGCTATTAATTA
TGACTATTATCAAGCTTGCAAAGACTCGGAATCAGTCAAGAACACAATTT
ATCAGTCTGGTTTTATCTGCAACAAAGAAAAATCGGAATGGCACCCTAAG
TCTATTATACAATGGTTAGGTATAGTAATTGACACACATCAAAAACAATT
TAAAATTTCCTCACCTAGAACCGAATCCATTTTAGAATGCATCAAAAAGA
TTTTTTCATTTCGTCATGTAACTGCACGTTCTCTTGCTCGGCTCACAGGA
AAGATCATGTCAACAAAGTTTGTGTTAGGAAATATAGTTCGTTTAAAAAC
TCGAAATCTTTACAAACTAATAGAAAGTAGAATCTCTTGGGATTTTTATT
TCAAACTAGAACAATTTCCAGATGCTATTGAAGAAATTAAGTTTTGGCAG
CAAAACATCAAAGAGTTAAACTCGAGGGAGATTTATAAAAATGAAATTCC
GTTTATGAAAGTTTTTTCTGACGCAAATGACAGCAATCTCGGATAATGAT
ATAAGTTTCAGAAATTTATGGCCTCGTGAACGAGAGAGTTCAACATTCAG
GGAATTATTAGCAATAGCTTTTACGATGCATGCTTTCAATTCAAAACTAC
AAGGGAACAATGTTCTCTGGCACANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTAAATAGACTCTGGGGACCTTTTTCTGTAGATCTTTTTGCT
GATAATTCTAACACTAAATGTGCACGTTTTTGCTCAAAATACTTTTCTCC
ATTTTCATTCAAAGTAGACGCGTTCAGTTTTGATTGATCTGGGGAAAATG
CTCTAATGGTGCCACCCATTTATTTAATAACAAAGTGTATTAAACAATTC
GATGAATGCCAAAAGCTTAGAAGATCAGATATAAAATTCCTCNATCTGAA
GGTGTAGTAAATAAATAAAGTTATTTTCGGTTCAACGATTAGAAAATAAG
TGAATTTATTTACGGCATCCGAAAGATAATAGCCTATCGTTCTGTAAAAT
AAAAAAAAATAAAAAAAAAAATCNTGACATATACAGACAGGGCCACTGGG
TTTACATTGCGAGACTTAATTCAAACCTGTGTCCGGTAAAAGGTTTGGAA
AGGTACCTCGAATTGGGAAACATTAAAAAATTATTCTGAGAATTTTATTT
TTAGAGGAGTAACTAAATCCAAAAGAAACAATCGTCTATGGAATAAAGAT
CAGCCAATTTCTTACAGTTCGGTACGTGACGATATCAAGAAGGTGATAAA
AGACATAGGTTTGGACCAAAAACAATATGGTGTTCATAGTTTGCGCTCGG
GCGGAGCGNACCCATTTTCGGCTACCGGGGTTATGGAGGTTTTTGCCCGG
GGGTAGTCTTGATCTATCTAATCCAGTAGAGTTAATCTTTTCGAATGAAA
ATTATTAAAGGACGGTTTTGTTTTTTCTGTTTAGTTGCTATAATTGTAAA
GAAAAAATTTTTATGAATGATGGTTAGTTTTTAGCAGTTAGAGATAACAT
AAGAGGTAATTTTTATAAACATGGAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024007XLOC_024007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039704-exon-sc0002171-1575043694:14342..14380TCONS_00039704-exon-sc0002171-1575043694:14342..14380Clytia hemisphaericaexon
TCONS_00039704-exon-sc0002171-1575043694:11702..12076TCONS_00039704-exon-sc0002171-1575043694:11702..12076Clytia hemisphaericaexon
TCONS_00039704-exon-sc0002171-1510915933:14342..14380TCONS_00039704-exon-sc0002171-1510915933:14342..14380Clytia hemisphaericaexon
TCONS_00039704-exon-sc0002171-1510915933:11702..12076TCONS_00039704-exon-sc0002171-1510915933:11702..12076Clytia hemisphaericaexon
TCONS_00039704-exon-sc0002171-1491911889:14342..14380TCONS_00039704-exon-sc0002171-1491911889:14342..14380Clytia hemisphaericaexon
TCONS_00039704-exon-sc0002171-1491911889:11702..12076TCONS_00039704-exon-sc0002171-1491911889:11702..12076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002171supercontigsc0002171:11702..14380 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326105	0.733751	0	0.191706	0.233384	0	0.889995	0.624902	0.583345	1.41146	1.05201	0.675649	2.53221	2.63085	1.5548	0.527296	3.24793	1.32184	0.183969	0.642643	0.669305	0.489695	0.901974	0.86656	0.557428	0.994982	0.94921	0.506511	0.458105	0.0851727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top