TCONS_00039701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039701
Unique NameTCONS_00039701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039701 ID=TCONS_00039701|Name=TCONS_00039701|organism=Clytia hemisphaerica|type=transcript|length=870bp
NNGATGAACATCAATATTCTTTTGGTACACCTGCCAGGCAAAGATAATGT
TTTTGCTGACTTACTTTCTCGCCTGCAGGTTGGCCGGTTCTTGAGTCTAG
CAGAGTCCGCCAGTCCAGAACCTTCCAGGATCCCGGATGAAGCATGGGAG
ATCTTAGACTTGCTCGAGACCGTTTACTAGCTGAAGGTATCTCTCGAAAC
TCTTTGCGCACATATCAATCAGGCTTCAATCGCTTTCAAGATTTTGCTTC
ATGTATCGCTTTGTGTGGTTGCTGCCACAAGAATTACATTTAGAACTATT
TGTCACTTCTCTTGCGAGACAAGGTCTACAGTACAATACAATAAAAGTAT
ATCTCTATGGAATTCAGTTTTGCGCACTCCAACAAGGCGTCGAAGTTAGA
ATTGCTTCCATGCGAAGACTCTACTATGTCTGTAGAGGGATAAGGCGCAC
TCAAGTGGCTAGAAGAAGGACTAGAAATCCTATCACACCTGCACACCTTC
GACaaattttatcttttatctCTAGCAGTCAACTTTCTGCCTACGACCAA
GCACTTTGGAAATGTCTAGTGCTTACAGCTTTTTTTGGTCTTCTTCGAGT
TTCAGAGTATACCTCAGCTAGTTCAAGGTCATTTGATCCATTAACAAACC
TTTGTGTGTCAGATGTTTCCTTACAAGGACCTAGTGTACTTATCAGAATA
AAAGCAAGCAAGACAGACCCTTTTCGTGTGGGAACCACCATCACTCTGTG
GGAAGGttgtgcccccccccctttgtCCTGTTAATGCCATatcttctttt
tactttttccgGATTACACGTCCACCTGGACCGTTCTTCGTTTTGGAATC
AGGCGAATAcattactaaag
Run BLAST on NCBI

transcript from alignment at sc0002170:15077..15946

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039701 ID=TCONS_00039701|Name=TCONS_00039701|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0002170:15077..15946 (Clytia hemisphaerica)
ctttagtaatgTATTCGCCTGATTCCAAAACGAAGAACGGTCCAGGTGGA
CGTGTAATCcggaaaaagtaaaaagaagatATGGCATTAACAGGacaaag
gggggggggcacaaCCTTCCCACAGAGTGATGGTGGTTCCCACACGAAAA
GGGTCTGTCTTGCTTGCTTTTATTCTGATAAGTACACTAGGTCCTTGTAA
GGAAACATCTGACACACAAAGGTTTGTTAATGGATCAAATGACCTTGAAC
TAGCTGAGGTATACTCTGAAACTCGAAGAAGACCAAAAAAAGCTGTAAGC
ACTAGACATTTCCAAAGTGCTTGGTCGTAGGCAGAAAGTTGACTGCTAGa
gataaaagataaaatttGTCGAAGGTGTGCAGGTGTGATAGGATTTCTAG
TCCTTCTTCTAGCCACTTGAGTGCGCCTTATCCCTCTACAGACATAGTAG
AGTCTTCGCATGGAAGCAATTCTAACTTCGACGCCTTGTTGGAGTGCGCA
AAACTGAATTCCATAGAGATATACTTTTATTGTATTGTACTGTAGACCTT
GTCTCGCAAGAGAAGTGACAAATAGTTCTAAATGTAATTCTTGTGGCAGC
AACCACACAAAGCGATACATGAAGCAAAATCTTGAAAGCGATTGAAGCCT
GATTGATATGTGCGCAAAGAGTTTCGAGAGATACCTTCAGCTAGTAAACG
GTCTCGAGCAAGTCTAAGATCTCCCATGCTTCATCCGGGATCCTGGAAGG
TTCTGGACTGGCGGACTCTGCTAGACTCAAGAACCGGCCAACCTGCAGGC
GAGAAAGTAAGTCAGCAAAAACATTATCTTTGCCTGGCAGGTGTACCAAA
AGAATATTGATGTTCATCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024004XLOC_024004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039701-exon-sc0002170-1491911889:15077..15946TCONS_00039701-exon-sc0002170-1491911889:15077..15946Clytia hemisphaericaexon
TCONS_00039701-exon-sc0002170-1510915933:15077..15946TCONS_00039701-exon-sc0002170-1510915933:15077..15946Clytia hemisphaericaexon
TCONS_00039701-exon-sc0002170-1575043694:15077..15946TCONS_00039701-exon-sc0002170-1575043694:15077..15946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002170supercontigsc0002170:15077..15946 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83886	5.23985	2.34966	1.02312	10.4561	8.35725	10.253	10.2561	10.7508	9.92135	14.8095	13.9094	17.235	19.4031	16.1968	14.6133	22.4014	21.857	17.2134	12.7237	18.3089	21.2095	8.13968	14.5453	39.6348	28.3684	4.58066	4.55534	4.50111	6.97506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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