TCONS_00039697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039697
Unique NameTCONS_00039697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039697 ID=TCONS_00039697|Name=TCONS_00039697|organism=Clytia hemisphaerica|type=transcript|length=2149bp
TTTAGATGAGTCAACATACAGGAGTTGATGGTGATTGTCCGTTAGCAGTT
GTGTTGTGTCGTTACCATGATGTAGGATGTAAATACAAGGCTAGACGAGT
AGACATCGACTTACATTACCAAGAATCAATGGAAGTCCATTTAGATTTTG
CGCACTCTCGAATACGTGAGTTGGAGGTTCGTCAAGAGAACATTTGTATG
AATGGGAAATTCTTATGGAAAATATCAAACTACGACCAACTAGTAAAACA
ATCGGCATCAAAGAAAGATAAAGAGAAATTATGCAGTCCGCCTTTTTATA
CGGGTCAGTACGGTTACAAACTTCGTGCAGAGGCCTTTCTAAATGGACTG
GGGCAAGGCAAAGGATCGCATCTATCGTTATATGTCGTCATCATGAAAGG
CGAGTATGACGCAATTTTGCCTTGGCCGTTCAAACAGAACGTGGATTTTG
TCTTGATAGATCAAGACGATGATAAAGCAAACCGTCAAAATAAAGTCTGG
AAATTATCATGCGAAAGAAACAGTGACTATTTTCAACGCCCTAATAAAGC
GAAAAGTTTGGGTTTTGGATGTCCCAAATTTGTTTCCTTGGACACTTTAA
AGAGCAGAAATTATATTCGTGATCAAacgatttttattaaaattgaaGTG
GAATCTTCAGACCACCTCATATTTGCTCCGGTCGCTACTCATTGATCATA
GGCTAAGTTTATTTTTGGTTAGGCTGTTGTTTACTTTATCAATTCTAGTC
ATTATTCAATCAAATTGAAGAGGCCTGGGTTTTACCCGGATTCTGGTGGG
CGCCCATTTAAACCTTATGGGTGAAAAAGAAACTTCTCTTTTATGTTTTA
CTGtatctttttataaaattaatGAGGCTCAGAAATTACAAAGATATATG
AACAGTTtgagaacaatgctgagcctgtttccaagaaattttagggtcaa
agcaacgtagtaaaaattgggtagcCTAAGATAATTTGATTTCGCCTAAA
AACAAGAACAGGGTAATAAAAATTCATGGtgtcaaaaagatttaatcAAC
CAAGCCTCTTAAAAATTTACTGGctctaataaaaaaactttgCCAGCAAG
TATGTATTGCCGTAAAAAAGCGCTCAACTTTATTTAGTCAATATCCCTTA
ATGTGAAATTTGTCACCCTAAATATCACGGGCTCTTTAAAGTTTTGTCAA
TGTGAGAAAAAGGAAGTTCTTTTCGTGGGCAACTATATGACAGAAACGTT
TACAGCTTCAACGCCACCCTCCTTTTCCTGTTTATCAATCATGATCTTTT
CCTCATCTTCTCAATTATTTGTAGGAGTATggtgatgaaaaatgaaattc
atcCTAATTCCTTCCTTCAACGTCcttgtcatttttcaattcaattgatA
ATTGACATCTTATTATAGGATACTCTAAACTCTAGTGAGATGAACGATCA
GGCTAGGGAGATTCCCATTTATCTTCTCCACTCTGGACACACTGTAATGT
AAATATTTCTTCGTATAATTAGAGTTGATTTCTAATTGCTTGAACAACTA
GAATtatcttacacccctgtctcacagccccggtggaattttttcccaca
gcggggataaaaaagTCTATCGAAAACCTAATGGGGATAaatattctatt
gttccaagcttaaaaaatccagttggatggttttggagtgccatTTGTAa
ctttgaatttcgaatggggataaaattaaagtcaatttcccaccGGGGCG
AAATTNCAATGGGGATAAAtactctattgttccaagcttaaaaaatccag
ttggatggttttggagtgccatTTATAactttgaatttcgaatggtgata
aaattaaagtcaatttcccaccggggcgaaattttggccaaatcttCCAT
TGGGCGTGGGGTTCCAGTAgatctgtgatacaggggtgttatcttgtaaa
aatattttatagaaTAACGTTTACATGGAATTATTCAtaattttctaaat
aaaaatttaaacccgtGCTGCTATATTTGTTTGAATTACtgagtaatatt
ttttttttggtaggGCTTTCTCTTCAATATAGATTTGTTTCTAAGGTAAT
TGGATTTTAGTTTTGAAggtattcaaaataaaacgtctttataaaaata
Run BLAST on NCBI

protein sequence of TCONS_00039697-protein

>TCONS_00039697-protein ID=TCONS_00039697-protein|Name=TCONS_00039697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MSQHTGVDGDCPLAVVLCRYHDVGCKYKARRVDIDLHYQESMEVHLDFAH
SRIRELEVRQENICMNGKFLWKISNYDQLVKQSASKKDKEKLCSPPFYTG
QYGYKLRAEAFLNGLGQGKGSHLSLYVVIMKGEYDAILPWPFKQNVDFVL
IDQDDDKANRQNKVWKLSCERNSDYFQRPNKAKSLGFGCPKFVSLDTLKS
RNYIRDQTIFIKIEVESSDHLIFAPVATH
Run BLAST on NCBI

transcript from alignment at sc0002170:537..3120+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039697 ID=TCONS_00039697|Name=TCONS_00039697|organism=Clytia hemisphaerica|type=transcript|length=2584bp|location=Sequence derived from alignment at sc0002170:537..3120+ (Clytia hemisphaerica)
TTTAGATGAGTCAACATACAGGAGTTGATGGTGATTGTCCGTTAGCAGTT
GTGTTGTGTCGTTACCATGATGTAGGATGTAAATACAAGGTTAGTACTTA
CTCCCTTTCCTTCTGTACGAAATGAATAATCTGACGCACGTGACCTTATA
AACAGTTCTGGTTCTACCTGATCACATGAGAAAATTCGTAGAAAAGTGAA
TAAGCCTCTTTGTccaagaaattatattttttaactcTACGAGGCACTAT
ACTATAATCTTACATTTTTATGTCCTTTGATTTTGAACTTGCCGGGAAAT
AGAATCATTCGAATTTATATACTTTCATGTGCGTTCAATACGATAAAGTC
AAATGATCTGATTCACATAACATTTCAAAATACTTTCAATGTTTCACTAA
GTGAAGGTTGTTTTTGAAATTGAGTTATCTACCTCGACCATATTTCTTGG
CGGGTAAATAAACAGCCCTGAAATAGTTGCAAGGAAATTTAGCCTTGAAA
GTTCTATTTTTCTGACTACCACAGGCTAGACGAGTAGACATCGACTTACA
TTACCAAGAATCAATGGAAGTCCATTTAGATTTTGCGCACTCTCGAATAC
GTGAGTTGGAGGTTCGTCAAGAGAACATTTGTATGAATGGGAAATTCTTA
TGGAAAATATCAAACTACGACCAACTAGTAAAACAATCGGCATCAAAGAA
AGATAAAGAGAAATTATGCAGTCCGCCTTTTTATACGGGTCAGTACGGTT
ACAAACTTCGTGCAGAGGCCTTTCTAAATGGACTGGGGCAAGGCAAAGGA
TCGCATCTATCGTTATATGTCGTCATCATGAAAGGCGAGTATGACGCAAT
TTTGCCTTGGCCGTTCAAACAGAACGTGGATTTTGTCTTGATAGATCAAG
ACGATGATAAAGCAAACCGTCAAAATAAAGTCTGGAAATTATCATGCGAA
AGAAACAGTGACTATTTTCAACGCCCTAATAAAGCGAAAAGTTTGGGTTT
TGGATGTCCCAAATTTGTTTCCTTGGACACTTTAAAGAGCAGAAATTATA
TTCGTGATCAAacgatttttattaaaattgaaGTGGAATCTTCAGACCAC
CTCATATTTGCTCCGGTCGCTACTCATTGATCATAGGCTAAGTTTATTTT
TGGTTAGGCTGTTGTTTACTTTATCAATTCTAGTCATTATTCAATCAAAT
TGAAGAGGCCTGGGTTTTACCCGGATTCTGGTGGGCGCCCATTTAAACCT
TATGGGTGAAAAAGAAACTTCTCTTTTATGTTTTACTGtatctttttata
aaattaatGAGGCTCAGAAATTACAAAGATATATGAACAGTTtgagaaca
atgctgagcctgtttccaagaaattttagggtcaaagcaacgtagtaaaa
attgggtagcCTAAGATAATTTGATTTCGCCTAAAAACAAGAACAGGGTA
ATAAAAATTCATGGtgtcaaaaagatttaatcAACCAAGCCTCTTAAAAA
TTTACTGGctctaataaaaaaactttgCCAGCAAGTATGTATTGCCGTAA
AAAAGCGCTCAACTTTATTTAGTCAATATCCCTTAATGTGAAATTTGTCA
CCCTAAATATCACGGGCTCTTTAAAGTTTTGTCAATGTGAGAAAAAGGAA
GTTCTTTTCGTGGGCAACTATATGACAGAAACGTTTACAGCTTCAACGCC
ACCCTCCTTTTCCTGTTTATCAATCATGATCTTTTCCTCATCTTCTCAAT
TATTTGTAGGAGTATggtgatgaaaaatgaaattcatcCTAATTCCTTCC
TTCAACGTCcttgtcatttttcaattcaattgatAATTGACATCTTATTA
TAGGATACTCTAAACTCTAGTGAGATGAACGATCAGGCTAGGGAGATTCC
CATTTATCTTCTCCACTCTGGACACACTGTAATGTAAATATTTCTTCGTA
TAATTAGAGTTGATTTCTAATTGCTTGAACAACTAGAATtatcttacacc
cctgtctcacagccccggtggaattttttcccacagcggggataaaaaag
TCTATCGAAAACCTAATGGGGATAaatattctattgttccaagcttaaaa
aatccagttggatggttttggagtgccatTTGTAactttgaatttcgaat
ggggataaaattaaagtcaatttcccaccGGGGCGAAATTNCAATGGGGA
TAAAtactctattgttccaagcttaaaaaatccagttggatggttttgga
gtgccatTTATAactttgaatttcgaatggtgataaaattaaagtcaatt
tcccaccggggcgaaattttggccaaatcttCCATTGGGCGTGGGGTTCC
AGTAgatctgtgatacaggggtgttatcttgtaaaaatattttatagaaT
AACGTTTACATGGAATTATTCAtaattttctaaataaaaatttaaacccg
tGCTGCTATATTTGTTTGAATTACtgagtaatattttttttttggtaggG
CTTTCTCTTCAATATAGATTTGTTTCTAAGGTAATTGGATTTTAGTTTTG
AAggtattcaaaataaaacgtctttataaaaata

Coding sequence (CDS) from alignment at sc0002170:537..3120+

>TCONS_00039697 ID=TCONS_00039697|Name=TCONS_00039697|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0002170:537..3120+ (Clytia hemisphaerica)
ATGAGTCAACATACAGGAGTTGATGGTGATTGTCCGTTAGCAGTTGTGTT
GTGTCGTTACCATGATGTAGGATGTAAATACAAGGCTAGACGAGTAGACA
TCGACTTACATTACCAAGAATCAATGGAAGTCCATTTAGATTTTGCGCAC
TCTCGAATACGTGAGTTGGAGGTTCGTCAAGAGAACATTTGTATGAATGG
GAAATTCTTATGGAAAATATCAAACTACGACCAACTAGTAAAACAATCGG
CATCAAAGAAAGATAAAGAGAAATTATGCAGTCCGCCTTTTTATACGGGT
CAGTACGGTTACAAACTTCGTGCAGAGGCCTTTCTAAATGGACTGGGGCA
AGGCAAAGGATCGCATCTATCGTTATATGTCGTCATCATGAAAGGCGAGT
ATGACGCAATTTTGCCTTGGCCGTTCAAACAGAACGTGGATTTTGTCTTG
ATAGATCAAGACGATGATAAAGCAAACCGTCAAAATAAAGTCTGGAAATT
ATCATGCGAAAGAAACAGTGACTATTTTCAACGCCCTAATAAAGCGAAAA
GTTTGGGTTTTGGATGTCCCAAATTTGTTTCCTTGGACACTTTAAAGAGC
AGAAATTATATTCGTGATCAAacgatttttattaaaattgaaGTGGAATC
TTCAGACCACCTCATATTTGCTCCGGTCGCTACTCATTGAATGAGTCAAC
ATACAGGAGTTGATGGTGATTGTCCGTTAGCAGTTGTGTTGTGTCGTTAC
CATGATGTAGGATGTAAATACAAGGCTAGACGAGTAGACATCGACTTACA
TTACCAAGAATCAATGGAAGTCCATTTAGATTTTGCGCACTCTCGAATAC
GTGAGTTGGAGGTTCGTCAAGAGAACATTTGTATGAATGGGAAATTCTTA
TGGAAAATATCAAACTACGACCAACTAGTAAAACAATCGGCATCAAAGAA
AGATAAAGAGAAATTATGCAGTCCGCCTTTTTATACGGGTCAGTACGGTT
ACAAACTTCGTGCAGAGGCCTTTCTAAATGGACTGGGGCAAGGCAAAGGA
TCGCATCTATCGTTATATGTCGTCATCATGAAAGGCGAGTATGACGCAAT
TTTGCCTTGGCCGTTCAAACAGAACGTGGATTTTGTCTTGATAGATCAAG
ACGATGATAAAGCAAACCGTCAAAATAAAGTCTGGAAATTATCATGCGAA
AGAAACAGTGACTATTTTCAACGCCCTAATAAAGCGAAAAGTTTGGGTTT
TGGATGTCCCAAATTTGTTTCCTTGGACACTTTAAAGAGCAGAAATTATA
TTCGTGATCAAacgatttttattaaaattgaaGTGGAATCTTCAGACCAC
CTCATATTTGCTCCGGTCGCTACTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024001XLOC_024001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039697-proteinTCONS_00039697-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039697-exon-sc0002170-1491911889:537..625TCONS_00039697-exon-sc0002170-1491911889:537..625Clytia hemisphaericaexon
TCONS_00039697-exon-sc0002170-1510915933:537..625TCONS_00039697-exon-sc0002170-1510915933:537..625Clytia hemisphaericaexon
TCONS_00039697-exon-sc0002170-1575043694:537..625TCONS_00039697-exon-sc0002170-1575043694:537..625Clytia hemisphaericaexon
TCONS_00039697-exon-sc0002170-1491911889:1061..3120TCONS_00039697-exon-sc0002170-1491911889:1061..3120Clytia hemisphaericaexon
TCONS_00039697-exon-sc0002170-1510915933:1061..3120TCONS_00039697-exon-sc0002170-1510915933:1061..3120Clytia hemisphaericaexon
TCONS_00039697-exon-sc0002170-1575043694:1061..3120TCONS_00039697-exon-sc0002170-1575043694:1061..3120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002170supercontigsc0002170:537..3120 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35307	2.54421	8.13698	10.1029	10.8404	7.7779	7.42144	8.37921	4.4764	4.42533	4.04611	3.94052	5.67889	5.03854	2.2315	2.11134	2.158	2.2831	3.90733	3.4861	2.63106	2.56984	3.6679	3.42185	9.22647	11.1293	3.06956	2.4723	3.19372	3.91884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00039697 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.607e-40
Identity = 85/223 (38.12%), Postives = 133/223 (59.64%), Query Frame = 3 
Query:   33 DCPLAVVLCRYHDVGCKYKARRVDIDLHYQESMEVHLDFAHSRI----REL-EVRQE----NICMNGKFLWKISNYDQLVKQSASKKDKEKLCSPPFYTGQYGYKLRAEAFLNGLGQGKGSHLSLYVVIMKGEYDAILPWPFKQNVDFVLIDQDDDK-ANRQNKVWKLSCERNSDYFQRPNKAK------SLGFGCPKFVSLDTLKSRNYIRDQTIFIKIEVE 653
             C  A+VLC + D GCK++  ++ +  H +ES++ HL    + +    +EL E+R+E    ++  +G  +WKI +Y + ++++ +K + E   SP FYT +YGYKL+  AFLNG G G+G+HLSLY+ ++ G +D +L WPF + V F L+DQ D   A  Q+       + N   FQ+P   +      SLGFG PKF+S   ++ RNY+RD  +FI+  VE
Sbjct:  242 SCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECF-SPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463
The following BLAST results are available for this feature:
BLAST of TCONS_00039697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.607e-4038.12TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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