TCONS_00039693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039693
Unique NameTCONS_00039693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039693 ID=TCONS_00039693|Name=TCONS_00039693|organism=Clytia hemisphaerica|type=transcript|length=310bp
GTGACAGTTTTGTCAGTTGGATGGTCATCACGGAGCAACCCTGTCCCTGT
ACTTGTGTCGACATTGTCAGGATTTGTCACTGTGTCCAGTTTGATAGCGT
CATTTGTATTTATGTCATCAGTATTTGTTGAGTCATTTATTTTATGGTCA
TCAGTAATCATCGTAACGTCGTCAGTATCTATTGTGATTTTGTCCTGGTT
TTCCGCAATTGTCAAAGTTATTGTCGAACTGTCTCGGTCAACTGGTTTTA
CCGTAAAGTCACAGTCGTTCAAAGTTATTTTGTCAGCCGATTTGGATGTG
GTGGTGGACG
Run BLAST on NCBI

protein sequence of TCONS_00039693-protein

>TCONS_00039693-protein ID=TCONS_00039693-protein|Name=TCONS_00039693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
VTVLSVGWSSRSNPVPVLVSTLSGFVTVSSLIASFVFMSSVFVESFILWS
SVIIVTSSVSIVILSWFSAIVKVIVELSRSTGFTVKSQSFKVILSADLDV
VVD
Run BLAST on NCBI

transcript from alignment at sc0002167:7084..7393

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039693 ID=TCONS_00039693|Name=TCONS_00039693|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at sc0002167:7084..7393 (Clytia hemisphaerica)
CGTCCACCACCACATCCAAATCGGCTGACAAAATAACTTTGAACGACTGT
GACTTTACGGTAAAACCAGTTGACCGAGACAGTTCGACAATAACTTTGAC
AATTGCGGAAAACCAGGACAAAATCACAATAGATACTGACGACGTTACGA
TGATTACTGATGACCATAAAATAAATGACTCAACAAATACTGATGACATA
AATACAAATGACGCTATCAAACTGGACACAGTGACAAATCCTGACAATGT
CGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATCCAACTGACA
AAACTGTCAC

Coding sequence (CDS) from alignment at sc0002167:7084..7393

>TCONS_00039693 ID=TCONS_00039693|Name=TCONS_00039693|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0002167:7084..7393 (Clytia hemisphaerica)
GTCCACCACCACATCCAAATCGGCTGACAAAATAACTTTGAACGACTGTG
ACTTTACGGTAAAACCAGTTGACCGAGACAGTTCGACAATAACTTTGACA
ATTGCGGAAAACCAGGACAAAATCACAATAGATACTGACGACGTTACGAT
GATTACTGATGACCATAAAATAAATGACTCAACAAATACTGATGACATAA
ATACAAATGACGCTATCAAACTGGACACAGTGACAAATCCTGACAATGTC
GACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATCCAACTGACAA
AACTGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023997XLOC_023997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039693-exon-sc0002167-1491911889:7084..7393TCONS_00039693-exon-sc0002167-1491911889:7084..7393Clytia hemisphaericaexon
TCONS_00039693-exon-sc0002167-1510915933:7084..7393TCONS_00039693-exon-sc0002167-1510915933:7084..7393Clytia hemisphaericaexon
TCONS_00039693-exon-sc0002167-1575043694:7084..7393TCONS_00039693-exon-sc0002167-1575043694:7084..7393Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039693-proteinTCONS_00039693-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002167supercontigsc0002167:7084..7393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351113	1.02717	0	0	0	0.374162	0.451411	0	0.295876	0	0	0.467678	0.467028	0.242507	0.398747	0.213958	0	0	0	0.390569	0	0	0.115057	0	0.753948	0.33644	0	0	0.389708	0.794101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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