TCONS_00039686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039686
Unique NameTCONS_00039686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039686 ID=TCONS_00039686|Name=TCONS_00039686|organism=Clytia hemisphaerica|type=transcript|length=1094bp
GTGAGTTGCTATTATATGTCGTATCGTTTATCCGGTTTGATAGTCGCGGC
TGAAAATCGTCGCGCAGACGTGCATTTGCACGTTGGATGCGATTGTTCGA
ACAGTTTCAACGTTGTAGCGACGAGAGGTGCTCTGAAGACGGAAGATTGC
TTGCCTCCCCTCACAAGgcaagttttgacaattttgacgCAACTGGAAGG
GGCGGAAGGTTACGCAGTGAGCCACAAATTACGTTTTCGTATCACTCCCA
AGAATGGGTTTGATAGTTTTGGATCACACCAACACCCTTTATTGACGAAT
GGCCTCGGTGAAGTGCATAATCCACGACCCCTCTAATGCTTTTCAAAACC
TACTTATATTTTTTATCGTGTACTCCAAAGTACCTTATAGATGGGGAGAT
CGGAGCGGGTCAGAGTGGTTGGAAAACCTTGAAGCTTAAGCAGCGGGGAG
AGTACTGAACTCCTCTACTTAATTACTCGTTGTActttagactttttctt
tttgtcgGCACCACACGGATGAGCAATTTTTCTTGGATTTGATGTTTCcc
tctaggcttctgctcatcctttGATAAAAAAAGCTGATCATGGTGCTTTA
TAGGAAGTGAAgaggtctgcgaatcagacaACACACACATGATTAAGCGA
AGTCAGTCATGCATTCCCCTTTGATTAGCTCATTCGAAGTGGTTTAAATC
CACCTCAGTTAAATAATCGACGTTTTTTGAGAATATATGGAAAGATCACA
AAAACTTCTTTGGATTAGGATTGGATTTAGTGTCGGGTATgtgtaacctg
ataacagattgcGTATTTTCTAGCCCAGTACCCTGAAGCTCTAAAGTCGT
GGACGAAAATATACATGTAGTTATATAAATCCCCGGATTAAGTAAAAGGG
AAGAAGTGACGCGAGGATGAGGATGATACCGCTTTTAATAGCTCCTATTT
TAAGAAATTGTACATTTCAGTAGTATTTTTGTagataaattttttaattt
atagatGCATTCTCATCATATGTATATATGTTGAATTTTTGAACAAAGGT
GAATtgtgaaaatcctgaaaatataTCATTAAGATCGAGCCCTT
Run BLAST on NCBI

transcript from alignment at sc0002165:14499..15763+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039686 ID=TCONS_00039686|Name=TCONS_00039686|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at sc0002165:14499..15763+ (Clytia hemisphaerica)
GTGAGTTGCTATTATATGTCGTATCGTTTATCCGGTTTGATAGTCGCGGC
TGAAAATCGTCGCGCAGACGTGCATTTGCACGTTGGATGCGATTGTTCGA
ACAGTTTCAACGTTGTAGCGACGAGAGGTGCTCTGAAGACGGAAGATTGC
TTGCCTCCCCTCACAAGGTAATCAACATCaaatccttttttttcttttca
cgaGCTAAACCTTTTGAATCGGAGTTTCTTATGTATTCTTCGGACATACC
GACCtgaattctttttaaatattttttgcttcaATCTGATTTCACAGGAC
TGCATCAATTACATGtgtgatcaatttttttttttcaggcaagttttgac
aattttgacgCAACTGGAAGGGGCGGAAGGTTACGCAGTGAGCCACAAAT
TACGTTTTCGTATCACTCCCAAGAATGGGTTTGATAGTTTTGGATCACAC
CAACACCCTTTATTGACGAATGGCCTCGGTGAAGTGCATAATCCACGACC
CCTCTAATGCTTTTCAAAACCTACTTATATTTTTTATCGTGTACTCCAAA
GTACCTTATAGATGGGGAGATCGGAGCGGGTCAGAGTGGTTGGAAAACCT
TGAAGCTTAAGCAGCGGGGAGAGTACTGAACTCCTCTACTTAATTACTCG
TTGTActttagactttttctttttgtcgGCACCACACGGATGAGCAATTT
TTCTTGGATTTGATGTTTCcctctaggcttctgctcatcctttGATAAAA
AAAGCTGATCATGGTGCTTTATAGGAAGTGAAgaggtctgcgaatcagac
aACACACACATGATTAAGCGAAGTCAGTCATGCATTCCCCTTTGATTAGC
TCATTCGAAGTGGTTTAAATCCACCTCAGTTAAATAATCGACGTTTTTTG
AGAATATATGGAAAGATCACAAAAACTTCTTTGGATTAGGATTGGATTTA
GTGTCGGGTATgtgtaacctgataacagattgcGTATTTTCTAGCCCAGT
ACCCTGAAGCTCTAAAGTCGTGGACGAAAATATACATGTAGTTATATAAA
TCCCCGGATTAAGTAAAAGGGAAGAAGTGACGCGAGGATGAGGATGATAC
CGCTTTTAATAGCTCCTATTTTAAGAAATTGTACATTTCAGTAGTATTTT
TGTagataaattttttaatttatagatGCATTCTCATCATATGTATATAT
GTTGAATTTTTGAACAAAGGTGAATtgtgaaaatcctgaaaatataTCAT
TAAGATCGAGCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023992XLOC_023992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039686-exon-sc0002165-1491911889:14499..14665TCONS_00039686-exon-sc0002165-1491911889:14499..14665Clytia hemisphaericaexon
TCONS_00039686-exon-sc0002165-1510915933:14499..14665TCONS_00039686-exon-sc0002165-1510915933:14499..14665Clytia hemisphaericaexon
TCONS_00039686-exon-sc0002165-1575043694:14499..14665TCONS_00039686-exon-sc0002165-1575043694:14499..14665Clytia hemisphaericaexon
TCONS_00039686-exon-sc0002165-1491911889:14837..15763TCONS_00039686-exon-sc0002165-1491911889:14837..15763Clytia hemisphaericaexon
TCONS_00039686-exon-sc0002165-1510915933:14837..15763TCONS_00039686-exon-sc0002165-1510915933:14837..15763Clytia hemisphaericaexon
TCONS_00039686-exon-sc0002165-1575043694:14837..15763TCONS_00039686-exon-sc0002165-1575043694:14837..15763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002165supercontigsc0002165:14499..15763 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.92116	0.522304	2.36035	3.80815	0.785938	1.40626	1.85342	2.04522	1.56318	1.56871	1.83429	1.60922	2.00245	1.38351	1.52769	1.05149	1.54781	1.07143	2.09887	2.43843	1.05239	2.32072	1.35692	1.71987	0.918046	1.18328	1.9448	2.25059	1.97551	1.24477
Blast
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BLAST of TCONS_00039686 vs. Swiss-Prot (Human)
Match: CAN15 (Calpain-15 OS=Homo sapiens GN=CAPN15 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.259e-27
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:    1 VSCYYMSYRLSGLIVAAENRRADVHLHVGCDCSNSFNVVATRGALKTEDCLPPLTRQVLTILTQLEGAEGYAVSHKLRFRITPK----NGFDSFGSHQHPLLTNGLGEVHNPRPL 333
            ++CYY+++  +GLIV  ENR    +LHV CDC++SFNVV+TRG+L+T+D +PPL RQVL IL+QLEG  G++++H+L  R   +    +   S G+H  P LT  +  +H PRPL
Sbjct:  973 MTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQDSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPP-LTPEVAGLHGPRPL 1086
The following BLAST results are available for this feature:
BLAST of TCONS_00039686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAN159.259e-2747.83Calpain-15 OS=Homo sapiens GN=CAPN15 PE=1 SV=1[more]
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