TCONS_00039685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039685
Unique NameTCONS_00039685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039685 ID=TCONS_00039685|Name=TCONS_00039685|organism=Clytia hemisphaerica|type=transcript|length=336bp
TCCTGTGactatcattgaaaattaagatcaaaCCATCGATCAAGGGACTT
TGTCTTCTTGTGCTTCTGGCATGGTTCGACTCTGAAGCTACATATCTCTG
GACTCTGCACCCTTTTTGAAAGTCCTCGTACATGCTATGATTTGGGAACA
GTTGAACATATTTTTCATGTACCAGTTTGTTTCGTGATGGATGGACATAg
ctgcattttttacagtggtatggatatgctgctgtaagaagaactgttta
cattttatttacgttgttaactcgagtgaatgtggaatattgtgactgat
gttgtatgaagtgacgataaatacatatactcaatg
Run BLAST on NCBI

transcript from alignment at sc0002163:20343..20678

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039685 ID=TCONS_00039685|Name=TCONS_00039685|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0002163:20343..20678 (Clytia hemisphaerica)
cattgagtatatgtatttatcgtcacttcatacaacatcagtcacaatat
tccacattcactcgagttaacaacgtaaataaaatgtaaacagttcttct
tacagcagcatatccataccactgtaaaaaatgcagcTATGTCCATCCAT
CACGAAACAAACTGGTACATGAAAAATATGTTCAACTGTTCCCAAATCAT
AGCATGTACGAGGACTTTCAAAAAGGGTGCAGAGTCCAGAGATATGTAGC
TTCAGAGTCGAACCATGCCAGAAGCACAAGAAGACAAAGTCCCTTGATCG
ATGGtttgatcttaattttcaatgatagtCACAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023991XLOC_023991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039685-exon-sc0002163-1491911889:20343..20678TCONS_00039685-exon-sc0002163-1491911889:20343..20678Clytia hemisphaericaexon
TCONS_00039685-exon-sc0002163-1510915933:20343..20678TCONS_00039685-exon-sc0002163-1510915933:20343..20678Clytia hemisphaericaexon
TCONS_00039685-exon-sc0002163-1575043694:20343..20678TCONS_00039685-exon-sc0002163-1575043694:20343..20678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002163supercontigsc0002163:20343..20678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1995	13.233	15.5071	13.4147	73.7339	44.1224	33.9748	46.3996	22.3206	36.5077	21.1108	27.2342	33.8407	27.4311	23.6551	28.5991	27.9259	34.0398	26.5128	36.3836	27.057	38.5115	22.1004	25.2057	18.6333	35.2144	58.0805	39.8673	55.122	48.7283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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