TCONS_00039684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039684
Unique NameTCONS_00039684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039684 ID=TCONS_00039684|Name=TCONS_00039684|organism=Clytia hemisphaerica|type=transcript|length=438bp
CAAGAAGATAGACCCTGACTTGAGCATATCAAGAATTAAACACCCTCTTT
CGTTATTTTGctatgctataattttttaaccTATCACGAACAGAGTTAAT
TGATTAAAGTATGCAACATTGAAGTGTTTTCATAGTTACTATATTTTTTC
CAAGCTTAAGTAACAAATTATTGGGTATAACGGAAAGAATGTTTCTCGCT
AATAAAGCATGGTatgtttatttcaaatttcatttgtttcatgTGCTCGA
AGCTTTATAGCCTTCTTCCAAAGATATTATTTCACTCTTTCACTCATTTT
CTCACTCAGGACATCCCGCCATGACGGCACCatctttgatgacgtcactt
gtGAAATCAACAGGGTCACCGTTAATTTCGACTTTGCTGATGCAGCCTTC
GAATGGTTTGTAGTCAGATGGTTGAAGATCAACTGAAA
Run BLAST on NCBI

transcript from alignment at sc0002163:6857..7294

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039684 ID=TCONS_00039684|Name=TCONS_00039684|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0002163:6857..7294 (Clytia hemisphaerica)
TTTCAGTTGATCTTCAACCATCTGACTACAAACCATTCGAAGGCTGCATC
AGCAAAGTCGAAATTAACGGTGACCCTGTTGATTTCacaagtgacgtcat
caaagatGGTGCCGTCATGGCGGGATGTCCTGAGTGAGAAAATGAGTGAA
AGAGTGAAATAATATCTTTGGAAGAAGGCTATAAAGCTTCGAGCAcatga
aacaaatgaaatttgaaataaacatACCATGCTTTATTAGCGAGAAACAT
TCTTTCCGTTATACCCAATAATTTGTTACTTAAGCTTGGAAAAAATATAG
TAACTATGAAAACACTTCAATGTTGCATACTTTAATCAATTAACTCTGTT
CGTGATAggttaaaaaattatagcatagCAAAATAACGAAAGAGGGTGTT
TAATTCTTGATATGCTCAAGTCAGGGTCTATCTTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023990XLOC_023990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039684-exon-sc0002163-1491911889:6857..7294TCONS_00039684-exon-sc0002163-1491911889:6857..7294Clytia hemisphaericaexon
TCONS_00039684-exon-sc0002163-1510915933:6857..7294TCONS_00039684-exon-sc0002163-1510915933:6857..7294Clytia hemisphaericaexon
TCONS_00039684-exon-sc0002163-1575043694:6857..7294TCONS_00039684-exon-sc0002163-1575043694:6857..7294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002163supercontigsc0002163:6857..7294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173488	0.481462	0.175414	0	0	0	0.410325	0.18647	0	0.501351	0.313919	0.103179	2.06071	2.35407	0.628535	0.660847	1.97712	1.56737	3.66363	3.61902	2.27829	2.46638	0.710534	0.484484	0.332671	0.445352	0.443819	0	0	0.350388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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