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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039683 ID=TCONS_00039683|Name=TCONS_00039683|organism=Clytia hemisphaerica|type=transcript|length=1630bp
GGCCCATCGATCTCATAGCCTTTCGGTGTCATACGGTGCCGTATCCTTGA
GTGACCGAGAATTCGGCAACCGTGATAGTGTATAAACATTGTTCGTCAGC
CGTAAAAGTTTACcgatcgaaatcgaaagtatgTTTCTAAACAACATGAA
ACAGATAATGGATTTCAATGTTTGTTGTTTTGTCTGTTTGTGGTTGTGGT
TTTGCTTTATCAAACTAGTTAATTTTACCTCATAATTGTGTTTATCAGTT
AGTTTAATTAATTCGAGCACTTTCTTGTACGCTTTTATACATCTTTGGTC
TAACTAAATAGCAGCAACTTTACTGTAATGATCATTAATCTTATAAATCT
GAAatctcctagatttatccataaaatttactctcctggaaaaagagaac
agatatttcaaagaaatctgCGGCTGCtcttgtattttaatgaccagcca
ggtcttttaattgagggctatgcatgttagcctccactgatgcaaattAA
CCAATCTCACGATACTGTAACCAAATTTCTAAGCAAGCTTAAGTACCTGC
ACACTTTTTATGAGAATACTATAGGTTGGTGTTATCTTGTAGAGGGAGAt
aattcttattttcaacaGCTTTTTGTGTGCATATCTTGCCAATATTGATG
TTATACATTTAAAGCCTCAAGCTTTTGTATTTGTCTCTAAgcaacttttt
cacattttgaggaagagaataaaaagaaaaatgagtaTCGCAAGAATCAG
AAATGATAGTTGGAAGGATGATGAAAACCTAAAAGAAGTGTTAACCGACT
ATGTCTCTAAGACTTTCAAGAAATGTGAAATTCTGGATTTTGTCAAAAGA
GATTTCCCTCAATATGCTTGGAGTCCATCATCACTATCACGTCGACTGAA
CCACTTCAGAATCCAATATACTGACTACAATGTCCCTGTTGATGTTATTC
AGGGGATAGTTAGCAATGAGATGGGTGGACCTGGAGCCCTTCTAGGCTAT
AGAGCTATGCATCAGAAAATCAGACAAGAATACAAATTAAACGTTCCAAG
AGCTGTGGTACATGGTGCCATGTTTAATGAAAATCCAGAGCTTCTAGAAG
CAAGAAGACCAGGAgcaaaaaagaaagagaaaggaCACTTTTCTTCCCCT
GGTCCTAATTTTGTCCACTCACTTGATGGACACGATAAGTTGATGGGATA
CCAAAACAGTACTTTCCCGATAGCAATTTATGGATCTATCGATACATGTA
GCCGAAAAATTTTGTGGTTGAAAGTATGGAGTAGCAACAGTAATCCAGAT
CTGATCGGAAGGTTTTACATTGAATACCTATACAAAAGCAAAGTCGTTGC
TCAAAACCTTCGAATAGATAAAGGAACAGAAACTGTCCAGATGGCTGGTG
TACATTGTTATTTACTGAAGGATAAAGTGGACGATCCAACaaaaaacatc
atatttggacCATCAACCTCAAACCAGGTAAATATTAAATTCATTTTGGT
GATTCTATATTCTGTCAAACTTTGTACAGGTCTTCCAACCAATTCTTTTT
TGGACTAGGATAAaagtgaaaatcaagaaaaattgtaaaaatttaaaact
cCATTTCAATCAACATTTCAAATATCTAAC Run BLAST on NCBI protein sequence of TCONS_00039683-protein >TCONS_00039683-protein ID=TCONS_00039683-protein|Name=TCONS_00039683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MSIARIRNDSWKDDENLKEVLTDYVSKTFKKCEILDFVKRDFPQYAWSPS
SLSRRLNHFRIQYTDYNVPVDVIQGIVSNEMGGPGALLGYRAMHQKIRQE
YKLNVPRAVVHGAMFNENPELLEARRPGAKKKEKGHFSSPGPNFVHSLDG
HDKLMGYQNSTFPIAIYGSIDTCSRKILWLKVWSSNSNPDLIGRFYIEYL
YKSKVVAQNLRIDKGTETVQMAGVHCYLLKDKVDDPTKNIIFGPSTSNQV
NIKFILVILYSVKLCTGLPTNSFLD Run BLAST on NCBI transcript from alignment at sc0002162:18571..20200 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039683 ID=TCONS_00039683|Name=TCONS_00039683|organism=Clytia hemisphaerica|type=transcript|length=1630bp|location=Sequence derived from alignment at sc0002162:18571..20200 (Clytia hemisphaerica)
GTTAGATATTTGAAATGTTGATTGAAATGgagttttaaatttttacaatt
tttcttgattttcacttTTATCCTAGTCCAAAAAAGAATTGGTTGGAAGA
CCTGTACAAAGTTTGACAGAATATAGAATCACCAAAATGAATTTAATATT
TACCTGGTTTGAGGTTGATGgtccaaatatgatgttttttGTTGGATCGT
CCACTTTATCCTTCAGTAAATAACAATGTACACCAGCCATCTGGACAGTT
TCTGTTCCTTTATCTATTCGAAGGTTTTGAGCAACGACTTTGCTTTTGTA
TAGGTATTCAATGTAAAACCTTCCGATCAGATCTGGATTACTGTTGCTAC
TCCATACTTTCAACCACAAAATTTTTCGGCTACATGTATCGATAGATCCA
TAAATTGCTATCGGGAAAGTACTGTTTTGGTATCCCATCAACTTATCGTG
TCCATCAAGTGAGTGGACAAAATTAGGACCAGGGGAAGAAAAGTGtcctt
tctctttcttttttgcTCCTGGTCTTCTTGCTTCTAGAAGCTCTGGATTT
TCATTAAACATGGCACCATGTACCACAGCTCTTGGAACGTTTAATTTGTA
TTCTTGTCTGATTTTCTGATGCATAGCTCTATAGCCTAGAAGGGCTCCAG
GTCCACCCATCTCATTGCTAACTATCCCCTGAATAACATCAACAGGGACA
TTGTAGTCAGTATATTGGATTCTGAAGTGGTTCAGTCGACGTGATAGTGA
TGATGGACTCCAAGCATATTGAGGGAAATCTCTTTTGACAAAATCCAGAA
TTTCACATTTCTTGAAAGTCTTAGAGACATAGTCGGTTAACACTTCTTTT
AGGTTTTCATCATCCTTCCAACTATCATTTCTGATTCTTGCGAtactcat
ttttctttttattctcttcctcaaaatgtgaaaaagttgcTTAGAGACAA
ATACAAAAGCTTGAGGCTTTAAATGTATAACATCAATATTGGCAAGATAT
GCACACAAAAAGCtgttgaaaataagaattaTCTCCCTCTACAAGATAAC
ACCAACCTATAGTATTCTCATAAAAAGTGTGCAGGTACTTAAGCTTGCTT
AGAAATTTGGTTACAGTATCGTGAGATTGGTTaatttgcatcagtggagg
ctaacatgcatagccctcaattaaaagacctggctggtcattaaaataca
agaGCAGCCGcagatttctttgaaatatctgttctctttttccaggagag
taaattttatggataaatctaggagatTTCAGATTTATAAGATTAATGAT
CATTACAGTAAAGTTGCTGCTATTTAGTTAGACCAAAGATGTATAAAAGC
GTACAAGAAAGTGCTCGAATTAATTAAACTAACTGATAAACACAATTATG
AGGTAAAATTAACTAGTTTGATAAAGCAAAACCACAACCACAAACAGACA
AAACAACAAACATTGAAATCCATTATCTGTTTCATGTTGTTTAGAAAcat
actttcgatttcgatcgGTAAACTTTTACGGCTGACGAACAATGTTTATA
CACTATCACGGTTGCCGAATTCTCGGTCACTCAAGGATACGGCACCGTAT
GACACCGAAAGGCTATGAGATCGATGGGCC Coding sequence (CDS) from alignment at sc0002162:18571..20200 >TCONS_00039683 ID=TCONS_00039683|Name=TCONS_00039683|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0002162:18571..20200 (Clytia hemisphaerica)
CTAGTCCAAAAAAGAATTGGTTGGAAGACCTGTACAAAGTTTGACAGAAT
ATAGAATCACCAAAATGAATTTAATATTTACCTGGTTTGAGGTTGATGgt
ccaaatatgatgttttttGTTGGATCGTCCACTTTATCCTTCAGTAAATA
ACAATGTACACCAGCCATCTGGACAGTTTCTGTTCCTTTATCTATTCGAA
GGTTTTGAGCAACGACTTTGCTTTTGTATAGGTATTCAATGTAAAACCTT
CCGATCAGATCTGGATTACTGTTGCTACTCCATACTTTCAACCACAAAAT
TTTTCGGCTACATGTATCGATAGATCCATAAATTGCTATCGGGAAAGTAC
TGTTTTGGTATCCCATCAACTTATCGTGTCCATCAAGTGAGTGGACAAAA
TTAGGACCAGGGGAAGAAAAGTGtcctttctctttcttttttgcTCCTGG
TCTTCTTGCTTCTAGAAGCTCTGGATTTTCATTAAACATGGCACCATGTA
CCACAGCTCTTGGAACGTTTAATTTGTATTCTTGTCTGATTTTCTGATGC
ATAGCTCTATAGCCTAGAAGGGCTCCAGGTCCACCCATCTCATTGCTAAC
TATCCCCTGAATAACATCAACAGGGACATTGTAGTCAGTATATTGGATTC
TGAAGTGGTTCAGTCGACGTGATAGTGATGATGGACTCCAAGCATATTGA
GGGAAATCTCTTTTGACAAAATCCAGAATTTCACATTTCTTGAAAGTCTT
AGAGACATAGTCGGTTAACACTTCTTTTAGGTTTTCATCATCCTTCCAAC
TATCATTTCTGATTCTTGCGAtactcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039683-exon-sc0002162-1491911889:18571..20200 | TCONS_00039683-exon-sc0002162-1491911889:18571..20200 | Clytia hemisphaerica | exon |
| TCONS_00039683-exon-sc0002162-1510915933:18571..20200 | TCONS_00039683-exon-sc0002162-1510915933:18571..20200 | Clytia hemisphaerica | exon |
| TCONS_00039683-exon-sc0002162-1575043694:18571..20200 | TCONS_00039683-exon-sc0002162-1575043694:18571..20200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002162 | supercontig | sc0002162:18571..20200 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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