|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039681 ID=TCONS_00039681|Name=TCONS_00039681|organism=Clytia hemisphaerica|type=transcript|length=763bp
ATGACTTTAGCACAGATAAATCGAAGAGGCGTTTCAGTGGGAGCTTTTGT
CGTTCAAACAATCATCCTTTAtatttttaaggtatttttacGTTTGTTGG
CCAAGAACAGTTGAGGAAAATTCATCCAAAGTAAAAGATGGAATTACGAG
ATCTTAATTCGCCTATTGTTTTATGAAGCAACATTCACCAATATAATATT
CGATTTAGTCTCATTAAAAGGTTTCATCAGTCTTTGGTCAAAAGAGAAGT
TGTTTATTGGGATCGTGaagattgtgatttttttatccgACGACTGCCAA
CGGATGACTTACTGTATTGCAATTCAATCACTTCGCTCGTCAgaacattt
aaaaagttttcatgaGAATTTTATCATCagcaaatatttcattttttaaa
catttatccCTGGACATTTTATTAAATTTACCAAATAGACATggccattt
tttcaaagattgacCTCTAGACAAATTATCCTACATCCCATGAACAGATT
TCTTCCGGAAGAGTCCAAAGCGTTTTCCAAATTTGTTTAAATAGAAGGGC
CTCCTTATGCCAGTAGGGTTAACTTGAACTATCTTAAGGGAGCTAATTTT
TGCGAACATTAGTTCCGCGAAATACGATTTTCACTAAAGATCTTCAGAAC
TCTTAAGAAATCGAGAGAATTCGGGAAAAAATTGGTGTCAACCCAGAAAA
TAAAATCCACAAAAAGCGTTTATTTTACAAACTCATATCGCGAAAATAGT
TCCCCAAGGTAGC Run BLAST on NCBI transcript from alignment at sc0002162:630..1784- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039681 ID=TCONS_00039681|Name=TCONS_00039681|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at sc0002162:630..1784- (Clytia hemisphaerica)
ATGACTTTAGCACAGATAAATCGAAGAGGCGTTTCAGTGGGAGCTTTTGT
CGTTCAAACAATCATCCTTTATATTTTTAAGGTATTTTTACGTTTGTTGG
CCAAGAACAGTTGAGGAAAATTCATCCAAAGTAAAAGATGGAATTACGAG
ATCTTAATTCGCCTATTGTTTTATGAAGCAACATTCACCAATATAATATT
CGATTTAGTCTCATTAAAAGGTATATACTGTCGAGTGATTTTGTTTCTCG
TGACATATAACACATATTGATGTTAAATTTAATGTTTAGTCATAGTCATA
CCTTAAAGAAATAAATTCTGGGGACACTTAATTTAGCAGATTTGGCAAAA
GATCTAATCTTTCCTGTCATCCGCCAAATTTGGAATGTGCACATTCCCCA
TAAGTGCCTGCTATTTCAGGCCTTAAAAACAGGTTTTTCTCATTTAACAG
TGTTTTGGGCTAAAAATATCCTTCATCTGCCAAATTAAACTCTTGCAAAT
TTATTTTTTCAAGCAATAAGCAAAATTAAATTCCTGCCAAAATTTCTTCC
TTTAAGGTACTCCTAATTTCATGGCTTTGAAATATTATGATTTTCTATTT
TCTACCTCTTAGGTTTCATCAGTCTTTGGTCAAAAGAGAAGTTGTTTATT
GGGATCGTGAAGATTGTGATTTTTTTATCCGACGACTGCCAACGGATGAC
TTACTGTATTGCAATTCAATCACTTCGCTCGTCAGAACATTTAAAAAGTT
TTCATGAGAATTTTATCATCAGCAAATATTTCATTTTTTAAACATTTATC
CCTGGACATTTTATTAAATTTACCAAATAGACATGGCCATTTTTTCAAAG
ATTGACCTCTAGACAAATTATCCTACATCCCATGAACAGATTTCTTCCGG
AAGAGTCCAAAGCGTTTTCCAAATTTGTTTAAATAGAAGGGCCTCCTTAT
GCCAGTAGGGTTAACTTGAACTATCTTAAGGGAGCTAATTTTTGCGAACA
TTAGTTCCGCGAAATACGATTTTCACTAAAGATCTTCAGAACTCTTAAGA
AATCGAGAGAATTCGGGAAAAAATTGGTGTCAACCCAGAAAATAAAATCC
ACAAAAAGCGTTTATTTTACAAACTCATATCGCGAAAATAGTTCCCCAAG
GTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039681-exon-sc0002162-1575043694:1565..1784 | TCONS_00039681-exon-sc0002162-1575043694:1565..1784 | Clytia hemisphaerica | exon |
| TCONS_00039681-exon-sc0002162-1575043694:630..1172 | TCONS_00039681-exon-sc0002162-1575043694:630..1172 | Clytia hemisphaerica | exon |
| TCONS_00039681-exon-sc0002162-1510915933:1565..1784 | TCONS_00039681-exon-sc0002162-1510915933:1565..1784 | Clytia hemisphaerica | exon |
| TCONS_00039681-exon-sc0002162-1510915933:630..1172 | TCONS_00039681-exon-sc0002162-1510915933:630..1172 | Clytia hemisphaerica | exon |
| TCONS_00039681-exon-sc0002162-1491911889:1565..1784 | TCONS_00039681-exon-sc0002162-1491911889:1565..1784 | Clytia hemisphaerica | exon |
| TCONS_00039681-exon-sc0002162-1491911889:630..1172 | TCONS_00039681-exon-sc0002162-1491911889:630..1172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002162 | supercontig | sc0002162:630..1784 - |
Blast
The following BLAST results are available for this feature:
|
