TCONS_00039678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039678
Unique NameTCONS_00039678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039678 ID=TCONS_00039678|Name=TCONS_00039678|organism=Clytia hemisphaerica|type=transcript|length=556bp
NNAAGATAACACTGTGTCTTTCACCCATGATAGTAACACACCGAATCCAC
CAAACAAAACACCAAGATCAACTGAATCCCAGGACAAATCTACTTGGAGT
GTAGTGGATGAGGACGATGAGATCAATACACCAATGACAGAAGACGTTAC
TTCCAACATAATAAACCAAACAGCTGGCGGACCACCAAATGAAATCAACt
tgaacaacagcaacaacgaTCACGCCCAATATCCTGGANNNNNNNAAAGA
CAAATGATCAAAGATGTCGCTTTTACATAAAAGGATAATGTAAATATGGT
CTGAAAAGCCGAGACTGTCAATTTATCCATCCTAAAGCCTgtacaaaatt
gctcaaatatgGCAACAAACAACCAAGAGGCTGCAACCTAGGTACCAAGT
GCCAAAGCTTCCACCCGAGGATGTGCTCATCATCTATTACAAGAGCGGAA
TACTTTAATCTTGACTGCAAATTCACGCATGTTAAGGGAACCAAACGACA
tcagaaaaagcaaaacaatcgtAATGATGAACCTCAGGATTTTCTCGCAA
TCCTGA
Run BLAST on NCBI

transcript from alignment at sc0002160:3768..4323

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039678 ID=TCONS_00039678|Name=TCONS_00039678|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at sc0002160:3768..4323 (Clytia hemisphaerica)
TCAGGATTGCGAGAAAATCCTGAGGTTCATCATTacgattgttttgcttt
ttctgaTGTCGTTTGGTTCCCTTAACATGCGTGAATTTGCAGTCAAGATT
AAAGTATTCCGCTCTTGTAATAGATGATGAGCACATCCTCGGGTGGAAGC
TTTGGCACTTGGTACCTAGGTTGCAGCCTCTTGGTTGTTTGTTGCcatat
ttgagcaattttgtacAGGCTTTAGGATGGATAAATTGACAGTCTCGGCT
TTTCAGACCATATTTACATTATCCTTTTATGTAAAAGCGACATCTTTGAT
CATTTGTCTTTNNNNNNNTCCAGGATATTGGGCGTGAtcgttgttgctgt
tgttcaaGTTGATTTCATTTGGTGGTCCGCCAGCTGTTTGGTTTATTATG
TTGGAAGTAACGTCTTCTGTCATTGGTGTATTGATCTCATCGTCCTCATC
CACTACACTCCAAGTAGATTTGTCCTGGGATTCAGTTGATCTTGGTGTTT
TGTTTGGTGGATTCGGTGTGTTACTATCATGGGTGAAAGACACAGTGTTA
TCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023984XLOC_023984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039678-exon-sc0002160-1491911889:3768..4323TCONS_00039678-exon-sc0002160-1491911889:3768..4323Clytia hemisphaericaexon
TCONS_00039678-exon-sc0002160-1510915933:3768..4323TCONS_00039678-exon-sc0002160-1510915933:3768..4323Clytia hemisphaericaexon
TCONS_00039678-exon-sc0002160-1575043694:3768..4323TCONS_00039678-exon-sc0002160-1575043694:3768..4323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002160supercontigsc0002160:3768..4323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40621	2.12386	1.96067	1.60512	1.34441	2.06449	2.56943	3.96391	1.8023	1.78372	0.80111	2.2691	1.40657	1.2913	0.540212	0.257449	0.426913	0.317271	0.110489	0.229271	0.818359	0.595574	0	0.49994	0.981269	1.53605	1.80044	1.05726	0.478779	0.365317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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