TCONS_00039673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039673
Unique NameTCONS_00039673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039673 ID=TCONS_00039673|Name=TCONS_00039673|organism=Clytia hemisphaerica|type=transcript|length=737bp
TATCAGAACAAAGTGTAGAACATTCATAgccaaaaaacgttgtttggaAT
TTTATTATTCTcgatgatttgaaaatttgagaagatTTCTAAAAGTCTCG
AAAAGTCAAGAACAGCGCCGAGTCTCGACCAAATTTTATccgttcttata
aaatagtgTGCGCCTTGAGAGTCTTTAAACATGCATAAacaagtattttt
ttcatttttaggctGGAGTAGGACGCGTTGCCCAAAATCCGGTATGGGTT
TTTGGCTTGGCCGATACGAGGTTTGTACCTGCCAAAGGATATATGGAAAT
TGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTGATCAATCGTGTCC
TAAATGCCAACAGCATTATCCATAGCGACGAATGGAGGGCATACATCAAT
CTCCCACAATTCGTTCCAAATTGTATTGGCCATGACACGGTTAACCATAC
GTACCACTTTGTAGATCCTCAAACACGGGCTCACACGCAGaATATAGAGT
CATATTGGAACCGcttcaaattgaaaatcaagGCTATGAAAGGGATCAGG
CGTGTTGATCTTCAAAGTTACATGGACGAGTTCATGTGGAGAGATTGGTA
CGGACTTGACCAGCCATTCGACAACATCATCGCTTGTATTAATATCGACT
ACCCCCAAACATGATTTTGATGTTGCTCCAGCTATTTTGTTTATTCCCtt
gtatatatatatttttatagtACTTTTTCAACatgtg
Run BLAST on NCBI

transcript from alignment at sc0002159:10644..12041-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039673 ID=TCONS_00039673|Name=TCONS_00039673|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at sc0002159:10644..12041- (Clytia hemisphaerica)
TATCAGAACAAAGTGTAGAACATTCATAGCCAAAAAACGTTGTTTGGAAT
TTTATTATTCTCGATGATTTGAAAATTTGAGAAGATTTCTAAAAGTCTCG
AAAAGTCAAGAACAGCGCCGAGTCTCGACCAAATTTTATCCGTTCTTATA
AAATAGTGTGCGCCTTGAGAGTCTTTAAACATGCATAAACAAGTATTTTT
TTCATTTTTAGGCTGGAGTAGGACGCGTTGCCCAAAATCCGGTATGGGTT
TTTGGCTTGGCCGATACGAGGTTTGTACCTGCCAAAGGATATATGGAAAT
TGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTGATCAATCGTGTCC
TAAATGCCAACAGCATTATCCATAGCGACGAATGGAGGGCATACATCAAT
CTCCCACAATTCGTTCCAAATTGTATTGGCCATGACACGGTTAACCATAC
GTACCACTTTGTAGATCCTCAAACACGGGCTCACACGCAGGTAAGCGATA
ATTACTACTCTTTAGAATTTGAGATATGTCTTCAAATTTCTCATATCTTT
CTGAACGGATCAAAAGTTACAGACCAACAAAGTAGAGTTAAAATAGCAAA
AATGGGCGAAACGGGCCAGCTTTTTGGAGCTATAACTTTACATAAATCAG
ACAATCAAAGCATTAAAAAAATATGTCAAGTTAAGATTATTTCGTTAGAA
ACCTATTTCTTATNACCAACAAGCTAGAGTTAAAATGGCAAAGATGGGCG
AAACGGGCCAGCTTTTTGGAGCTATAACTTTACATAAATCAAGTTAAGAT
TATTTCGTTAGAAACCTATTTCTTATATTTTTAGAATATAGAGTCATATT
GGAACCGCTTCAAATTGAAAATCAAGGCTATGAAAGGGATCAGGCGTGTT
GATCTTCAAAGTTACATGGACGAGTTCATGTGGAGGTAACTAAAAATTTA
ATAGTTTTTAGAAATTATGTTTAAAGGTTTTGTTTTGTTATGTAAAGTTT
TCGTTTACTAACTAAACTTTTTTAAATTACAAGCTATTTTGTATTGAATA
GACACAGATGTTTAGCAAAAACCAAGAAAATTCAAAATATTTGTTTATCT
CAGCGAAAAAAGACAATATGCCGACTCTGGTCTAATATGAAATATATGCC
CAATCTGAGACAGAGTTACTTAAGCTAATACAAAGCCTTTATTTTATCCA
AAAATAATTTAAATAAACTCTGTTAACTATTGACTGTCTTGTTTTATTAC
AGAGATTGGTACGGACTTGACCAGCCATTCGACAACATCATCGCTTGTAT
TAATATCGACTACCCCCAAACATGATTTTGATGTTGCTCCAGCTATTTTG
TTTATTCCCTTGTATATATATATTTTTATAGTACTTTTTCAACATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023980XLOC_023980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039673-exon-sc0002159-1575043694:11552..12041TCONS_00039673-exon-sc0002159-1575043694:11552..12041Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1575043694:11107..11207TCONS_00039673-exon-sc0002159-1575043694:11107..11207Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1575043694:10644..10789TCONS_00039673-exon-sc0002159-1575043694:10644..10789Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1510915933:11552..12041TCONS_00039673-exon-sc0002159-1510915933:11552..12041Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1510915933:11107..11207TCONS_00039673-exon-sc0002159-1510915933:11107..11207Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1510915933:10644..10789TCONS_00039673-exon-sc0002159-1510915933:10644..10789Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1491911889:11552..12041TCONS_00039673-exon-sc0002159-1491911889:11552..12041Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1491911889:11107..11207TCONS_00039673-exon-sc0002159-1491911889:11107..11207Clytia hemisphaericaexon
TCONS_00039673-exon-sc0002159-1491911889:10644..10789TCONS_00039673-exon-sc0002159-1491911889:10644..10789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002159supercontigsc0002159:10644..12041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134385	0.172982	0	0	0.703513	0	1.41927	0.606873	1.03904	0.421807	1.41015	1.02925	0	0.603313	0.44345	0.148016	0.201765	0.115004	0.214282	0.224231	0	0	0	0	0.892061	0.834759	0.800484	0.650305	0.223736	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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