TCONS_00039666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039666
Unique NameTCONS_00039666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039666 ID=TCONS_00039666|Name=TCONS_00039666|organism=Clytia hemisphaerica|type=transcript|length=547bp
NTACACAACGTCCAAATCAACACCGATGGATGACGACATAccaaacagcg
atatttcgtCGATTGACATATCTACAGTCGAAACACTGCCAACTTGTACT
GTCAACAATTGCTACGACCCGGAAGAAAAATCTTCGCTAAAATGTACCAA
CACAAAATGTTTACGGCTTGTTCATTTCAAGTGTACCAAGTTACCAGCCT
ACCAAGTCCAGATCCATCTAAATAATCAAACTTAACGCGCTTCCACCAAA
GTTAAAGGTACCTTCATTTGCGTTAATTGTGTTGAAGTTTCGAAAGACGT
TTCCTCCTTATGTAGTAACGAAGAAGAAGATCTCAAAAAGATCATCCAAA
GACGTGAtcaaaaaatcgagaaaatcgaAGAAAGTAAAACCAAACTAAGC
GAAAATAATAAAAACATGAAGAAGCTCATGAGAGAAAGAGGACTTGAGAA
ACATTTGCTTGATAACTTAAACAAAAGGATCGAATCGCAGATCAGTGAAC
TCGGGGAGACCATCAAATCATCTCTCTTAGAAGAAATTCAATCTTCC
Run BLAST on NCBI

transcript from alignment at sc0002157:30894..31440

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039666 ID=TCONS_00039666|Name=TCONS_00039666|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0002157:30894..31440 (Clytia hemisphaerica)
GGAAGATTGAATTTCTTCTAAGAGAGATGATTTGATGGTCTCCCCGAGTT
CACTGATCTGCGATTCGATCCTTTTGTTTAAGTTATCAAGCAAATGTTTC
TCAAGTCCTCTTTCTCTCATGAGCTTCTTCATGTTTTTATTATTTTCGCT
TAGTTTGGTTTTACTTTCTtcgattttctcgattttttgaTCACGTCTTT
GGATGATCTTTTTGAGATCTTCTTCTTCGTTACTACATAAGGAGGAAACG
TCTTTCGAAACTTCAACACAATTAACGCAAATGAAGGTACCTTTAACTTT
GGTGGAAGCGCGTTAAGTTTGATTATTTAGATGGATCTGGACTTGGTAGG
CTGGTAACTTGGTACACTTGAAATGAACAAGCCGTAAACATTTTGTGTTG
GTACATTTTAGCGAAGATTTTTCTTCCGGGTCGTAGCAATTGTTGACAGT
ACAAGTTGGCAGTGTTTCGACTGTAGATATGTCAATCGacgaaatatcgc
tgtttggTATGTCGTCATCCATCGGTGTTGATTTGGACGTTGTGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023973XLOC_023973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039666-exon-sc0002157-1491911889:30894..31440TCONS_00039666-exon-sc0002157-1491911889:30894..31440Clytia hemisphaericaexon
TCONS_00039666-exon-sc0002157-1510915933:30894..31440TCONS_00039666-exon-sc0002157-1510915933:30894..31440Clytia hemisphaericaexon
TCONS_00039666-exon-sc0002157-1575043694:30894..31440TCONS_00039666-exon-sc0002157-1575043694:30894..31440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002157supercontigsc0002157:30894..31440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72906	1.84241	4.9915	3.02306	1.1324	0.78298	0.674737	1.76871	0.265353	0.547804	1.59513	0.489337	0.139616	0.362482	0.298009	0.575657	0	0.403816	0	0.700555	0.20297	1.03952	0.240699	0.43766	0.45078	0.301733	0.575704	0.307204	0.116502	0.118697
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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