TCONS_00039659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039659
Unique NameTCONS_00039659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039659 ID=TCONS_00039659|Name=TCONS_00039659|organism=Clytia hemisphaerica|type=transcript|length=812bp
TTTAGAGGCTAGATTGTAGTTAGAACTCAAAGGCCAGCTTTTTATCCGAG
TGCAAGAGGCTAGTTGTCAGTGTGTCATTTTTAGGAATTAAATtggtaat
taattttttttcattttttttcatgtaCCATTATGAACACTTCTCCATGC
TTGAATTGTTATATGTTTAAAAGaCATTGATGATGTTGAATTCGGCTACG
CTTCGGCCTTCTtgagGATTGTGTCAATTTTGTATCATCATCAAATGTAT
GGTTACGTAATGGAGAGTCAATAATTTTAAAGATTATTCACCTTTTGTTG
GAATGTGTCAATTTCTTCCTCTGTCAATTTTGGTTTGTTGATCGTGTCGT
ACAGTTCTTCAAAGACCTTATcgtaaaaagATAACCATACCTCATCTTGG
TCAATTATCGTGTGAAACAGTCCCTCCTCTAAACGATCGGTTACCCGAAG
TAGCAAATGAAGCTCATCTACGATATACTTCTCCAAACAAACGTTCTCAA
GAAGCCTGTCATCTTTGCACCCTGGTTGTTTCTTCCAGTTTGAGAAGATA
AATCGTCACCTGAAATTGAAAGAATACGTTACATTATGATGCTTTGAGAA
ATGATAACATATAGACAAATCATCTGTTTTACGAAACTTACCGGTTTTCC
ACTCAAAGGATTCGTCGCCTGTTGATGTTGATTGCTGACTAGATCGATCC
GTGGACTGGCTTGATTGATCCGTGGACTGGCTTGATTGATCCGTAGATTG
ACTTGACTCAGTCCAAAGTGACGATTGTGAAAGTGGATCTGGTGGGCATA
AGAagaatttgc
Run BLAST on NCBI

transcript from alignment at sc0002157:30560..35448+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039659 ID=TCONS_00039659|Name=TCONS_00039659|organism=Clytia hemisphaerica|type=transcript|length=4889bp|location=Sequence derived from alignment at sc0002157:30560..35448+ (Clytia hemisphaerica)
TTTAGAGGCTAGATTGTAGTTAGAACTCAAAGGCCAGCTTTTTATCCGAG
TGCAAGAGGCTAGTTGTCAGTGTGTCATTTTTAGGAATTAAATtggtaat
taattttttttcattttttttcatgtaCCATTATGAACACTTCTCCATGC
TTGAATTGTTATATGTTTAAAAGGTATGTATGAAAATATTCAGCTAATTG
TGATATATATACagcaattttataaaaataattaaattaNCGATGGATTT
TAAGCCACTCGTTAACATCGGAGTGTTTGAAGCTTTTGTTACATTGGCAT
ACGATTTCTCAACTTGCGACTCAACCTTCGTCAGGGAAGATTGAATTTCT
TCTAAGAGAGATGATTTGATGGTCTCCCCGAGTTCACTGATCTGCGATTC
GATCCTTTTGTTTAAGTTATCAAGCAAATGTTTCTCAAGTCCTCTTTCTC
TCATGAGCTTCTTCATGTTTTTATTATTTTCGCTTAGTTTGGTTTTACTT
TCTtcgattttctcgattttttgaTCACGTCTTTGGATGATCTTTTTGAG
ATCTTCTTCTTCGTTACTACATAAGGAGGAAACGTCTTTCGAAACTTCAA
CACAATTAACGCAAATGAAGGTACCTTTAACTTTGGTGGAAGCGCGTTAA
GTTTGATTATTTAGATGGATCTGGACTTGGTAGGCTGGTAACTTGGTACA
CTTGAAATGAACAAGCCGTAAACATTTTGTGTTGGTACATTTTAGCGAAG
ATTTTTCTTCCGGGTCGTAGCAATTGTTGACAGTACAAGTTGGCAGTGTT
TCGACTGTAGATATGTCAATCGacgaaatatcgctgtttggTATGTCGTC
ATCCATCGGTGTTGATTTGGACGTTGTGTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTGTAGAGAGCCTTGTTTTTAGGAAAAATACCcgattttttag
tattttttaaagtttttttgagaaattgtgAATTTTGCAGTATTTTGTTC
AAGGCTcttctgcaaaaaaatttgacgtctgATCTCGTTGACGTCAGATG
AACAAAATGTTTACAATATTACCTTTTTTGCCCTAAAATGACCAATTGTA
GGGGTGATTCTCAGAATCTTGAAAATATCTGTGTTTCGTGGATTTGTCAA
ACAACCcgaaattaaatttagtgaaaaCTTCTTCCCTTAAAGTAACCTGA
TTGGAACCATTCTATTTCAatttagcaaattttagaatttaaatgaaaac
tattaatatatttttttcaaaaatgtagaCATTGATGATGTTGAATTCGG
CTACGCTTCGGCCTTCTtgaggtatgatcttttttttctttcaaaacccT
CTTCTTCCAGGCATCTCATTCTCTTCTCAACTTTCAAAAGATTGACACAT
GCGTCCTTTCTATTGATTTTCGAGTGAAAAATCTTCCTCAAATCATCATT
TTTCTTCTCGACACCTGTAAAATTAAGTTGCGATCAAATGATAAGTTAAA
TATGTTAAAAGTACAAAAGGGAGAGTGTGATTTTAATAAGAATTTATAAT
TTACCTTGGCCAGAGAAGATTCGCAAGGTTCCATATTTTCGCAGAATGTC
AGGTACATGTTTGGCCAAAATATGGATGTAGGGTGTCACAGGATAGCTCC
AACTATATCCACAACCGTTCATCTTCTTGAGCCTACCAATCCACTCGTAg
gtctaaaaaataattttgattttatttcagGATTGTGTCAATTTTGTATC
ATCATCAAATGTATGGTTACGTAATGGAGAGTCAATAATTTTAAAGATTA
TTCACCTTTTGTTGGAATGTGTCAATTTCTTCCTCTGTCAATTTTGGTTT
GTTGATCGTGTCGTACAGTTCTTCAAAGACCTTATcgtaaaaaggtaaaa
aaaaacattacaacaATGTCTCTGCCCTAACAGTATTATTCAAAGATATT
TGTTAAGACTTAATAAATAATAATTGTCATAAAACAggtttatttcaata
aaaatctaAGGTCTGTAGTAGATTCAAGATTTTGGCAGTGACTCAATTTG
CAAAAAATTTCAGCGGATAATCCGCTGAAATTTCATCCCTTAAGGTAGAT
GTTTATACCTTCCAAAGTTGCTGTGTTGGTAAGACATCTTTCTCAGGGAG
CAACTCACTGAAGTATTGTGGCAGCTTTCTTAGCATTTTCTTCTTATCTG
TTCCCATTAAGCTTGTCCATTCaagtttctttgatttcttctcCCTCCAA
AATGTCAGTGTGACCCCAATCCTTTTCATCAACTCAATCAGTTTATTTTC
CAAGAAGTTGTTGCCATTTTTCTANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAAAAATAAACGGTTA
GCcaccaaaaatactcattttattaacataattgtcagccaactttgaaa
atgtcacaaaacaggcctttatttttgaacacgATCACCTTCATCTTTTG
GAAAAGTTACCGTTACAGATTATATTTCTGCATTTTCAGATAACCATACC
TCATCTTGGTCAATTATCGTGTGAAACAGTCCCTCCTCTAAACGATCGGT
TACCCGAAGTAGCAAATGAAGCTCATCTACGATATACTTCTCCAAACAAA
CGTTCTCAAGAAGCCTGTCATCTTTGCACCCTGGTTGTTTCTTCCAGTTT
GAGAAGGTTCGTTTCTTGCCAGATTTTAAGGGATCTTGTCTGAAAATAAA
TGAAttgattacatgttttttttattaagcatgtaaaaatccgaaaacag
gctcagagatgcttaggtcgaaagcttaataaggctgaaaaatgcttgag
gatTGCTTATATCGTAATACTTAATACTTCTTATTCTACTATACAGTACT
GAAATACTGCTTATATCCATACTACAAAGTAgcttatacttttttcatag
GCTCGAGGTAAtacttagcatatgcttaatttttccccatttttttgaaa
tactgtaactttttgatttttcaaattgtaagattttttgaaaaattata
ttaaacATCTAATCAATGTAATATACAAGGACAGATTTGAGagctaaaat
ttaaaattgtctttgatgacgtcagcaaaactttcTTTCACACATTCGTA
GCTTTCTGAACCCATTCCAACACCTATAGCATTGTTACCTGAAATAAAAT
CACACATTTCATTATGTTCTTTTTGTTCTAAGAGCCTTTCGAAGGTAAAA
CAAAACGTAGCATTCCAAGTATATTAtagtttatgcttgcgaaaaaattt
tcgaacttGCTAAAATTTCTAGGCACCTGAACTTTTAAGTTGTGATCCAG
TTGATTCTATCACCTAGTACGATAATACCACCAGATTGGACTTCCGTGTT
AACTTGGTACCATCCCCACTAACTTTCGGCTGTAAAAATAAAACGAAAGA
CAAATAAGAAATAGCAAAGCATTGTTAAACAAAAcacactttttctttta
taagaataacttctataagaatatcagggagagatttcgggtttaaaaca
ataggcttattgtttagaacaatagaaaaataagaataatgctcaccctc
aaccaaagtacactattcttataaaagaatcaAATCTATTTTTCCAAGAA
TAACAAGAATAGCAATAATGATAGCGACAACTTACCATAACACTTTTCTC
TACACAACGTATTCTAGCATCTCTTTCCAGCTCATCTTTCAGCGAACATT
GAGCCCCAATGATTTTACCCTCGGTCCTCTGGATCTCAAATGTGTCTCTA
ATTTTTTCCACCCTGTGCGTCCTTGGTAACTCTCCCGCCAATTGCGTGAG
TTCGTGGTACGCCTTGAGTGAGACAATGTGTCAATCTAGCACGTACGAAA
TAGCTTTCTCCCTCTCTATTTCAGATAAATCGTCACCTGAAATTGAAAGA
ATACGTTACATTATGATGCTTTGAGAAATGATAACATATAGACAAATCAT
CTGTTTTACGAAACTTACCGGTTTTCCACTCAAAGGATTCGTCGCCTGTT
GATGTTGATTGCTGACTAGATCGATCCGTGGACTGGCTTGATTGATCCGT
GGACTGGCTTGATTGATCCGTAGATTGACTTGACTCAGTCCAAAGTGACG
ATTGTGAAAGTGGATCTGGTGGGCATAAGAagaatttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023966XLOC_023966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039659-exon-sc0002157-1491911889:30560..30732TCONS_00039659-exon-sc0002157-1491911889:30560..30732Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1510915933:30560..30732TCONS_00039659-exon-sc0002157-1510915933:30560..30732Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1575043694:30560..30732TCONS_00039659-exon-sc0002157-1575043694:30560..30732Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1491911889:31938..31980TCONS_00039659-exon-sc0002157-1491911889:31938..31980Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1510915933:31938..31980TCONS_00039659-exon-sc0002157-1510915933:31938..31980Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1575043694:31938..31980TCONS_00039659-exon-sc0002157-1575043694:31938..31980Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1491911889:32390..32553TCONS_00039659-exon-sc0002157-1491911889:32390..32553Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1510915933:32390..32553TCONS_00039659-exon-sc0002157-1510915933:32390..32553Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1575043694:32390..32553TCONS_00039659-exon-sc0002157-1575043694:32390..32553Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1491911889:33799..33965TCONS_00039659-exon-sc0002157-1491911889:33799..33965Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1510915933:33799..33965TCONS_00039659-exon-sc0002157-1510915933:33799..33965Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1575043694:33799..33965TCONS_00039659-exon-sc0002157-1575043694:33799..33965Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1491911889:35184..35448TCONS_00039659-exon-sc0002157-1491911889:35184..35448Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1510915933:35184..35448TCONS_00039659-exon-sc0002157-1510915933:35184..35448Clytia hemisphaericaexon
TCONS_00039659-exon-sc0002157-1575043694:35184..35448TCONS_00039659-exon-sc0002157-1575043694:35184..35448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002157supercontigsc0002157:30560..35448 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.320462	0.141813	0.0813429	0.0831546	0	0	0	0	0	0	0	0	0.128181	0	0.154735	0.188352	0.406145	0	0	0	0.158537	0.12057	0.216449	0.131411	0.466138	1.41656	0.136203	0.0730488	0.207699	0.440172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top