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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039658 ID=TCONS_00039658|Name=TCONS_00039658|organism=Clytia hemisphaerica|type=transcript|length=984bp
CGTTACCCTACCCCTACGGTTGAAGATCTTATTGGGAAATTATCCGGTGC
AAAATACTTTACAAAATTAGATATGAACAGTGCTTTTCANTGAGAAACGC
AAATGAGGCTATTGAGAGAACTCGTTACCCTACCCCTACGGTTGAAGATC
TTATTGGGAAATTATCCGGTGCAAAATACTTTACAAAATTAGATATGAAC
AGTGCTTTTCATCAACTCGAACTTGACCCTGAATCTCGTTATATTACCGC
TTTTCAAACGGAAGACCGTATTAAACGTTTCAAAAGGCTTTTATTCGGAC
TTAATTCTGCTCCTGAGGAACTTCAGCACATTTTGAGATCTATTTTAGCC
GATATACCCGGAGCTATGAACATGGCCGACGATATACTTGTGTACGGTAA
AACACAAGAGGAACATGACACTGTTTTAGAACAGACACTTGAAGCTTTGG
CTTAGATCTGAAAAAGTGCAAATTTAATAAACGTCACCTTGAGTACTTTG
GGTACGTTTTCTCAGAGGAAGGTATGCGACCTAGTGAGTTGAAGGTTTGA
GCGCTGAAAGAAATGTCGCGACCAGAAAATGCTAATGCTGCTAGGAGTTT
CCTAGGTTTTACAAATTACCTGAAACGATTCATACCCGATTACAATACGC
TTACTCATCCAATACGTCAGTTGCTTAAGAAAAACGCTCACTTTAAGTGT
AGTGATGAATGTGAAAAGTCGTTTAGAATTATTATCGATATGCTTTCCGA
AGAGAAAAACCTTGTTTATTTCGATGACGAGAAAGAGACTATGGTATACT
GCGACGCTAGCCCTGTCGGACTTTCTGCTATTTTATTACAACGTACTCCC
GGTAAAGACGATTTACATGTTATTAACTACTCGTCTCGTGCTTTAAAAGA
CGTCGAATGTCGCTACAGCCAAATCGAATGCGAATGCCTTGGTATGGTTT
ACGCTGCTGAGAAGAACCATATCTACCTTTTCGG Run BLAST on NCBI protein sequence of TCONS_00039658-protein >TCONS_00039658-protein ID=TCONS_00039658-protein|Name=TCONS_00039658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MSRPENANAARSFLGFTNYLKRFIPDYNTLTHPIRQLLKKNAHFKCSDEC
EKSFRIIIDMLSEEKNLVYFDDEKETMVYCDASPVGLSAILLQRTPGKDD
LHVINYSSRALKDVECRYSQIECECLGMVYAAEKNHIYLF Run BLAST on NCBI transcript from alignment at sc0002156:27471..28454 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039658 ID=TCONS_00039658|Name=TCONS_00039658|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at sc0002156:27471..28454 (Clytia hemisphaerica)
CCGAAAAGGTAGATATGGTTCTTCTCAGCAGCGTAAACCATACCAAGGCA
TTCGCATTCGATTTGGCTGTAGCGACATTCGACGTCTTTTAAAGCACGAG
ACGAGTAGTTAATAACATGTAAATCGTCTTTACCGGGAGTACGTTGTAAT
AAAATAGCAGAAAGTCCGACAGGGCTAGCGTCGCAGTATACCATAGTCTC
TTTCTCGTCATCGAAATAAACAAGGTTTTTCTCTTCGGAAAGCATATCGA
TAATAATTCTAAACGACTTTTCACATTCATCACTACACTTAAAGTGAGCG
TTTTTCTTAAGCAACTGACGTATTGGATGAGTAAGCGTATTGTAATCGGG
TATGAATCGTTTCAGGTAATTTGTAAAACCTAGGAAACTCCTAGCAGCAT
TAGCATTTTCTGGTCGCGACATTTCTTTCAGCGCTCAAACCTTCAACTCA
CTAGGTCGCATACCTTCCTCTGAGAAAACGTACCCAAAGTACTCAAGGTG
ACGTTTATTAAATTTGCACTTTTTCAGATCTAAGCCAAAGCTTCAAGTGT
CTGTTCTAAAACAGTGTCATGTTCCTCTTGTGTTTTACCGTACACAAGTA
TATCGTCGGCCATGTTCATAGCTCCGGGTATATCGGCTAAAATAGATCTC
AAAATGTGCTGAAGTTCCTCAGGAGCAGAATTAAGTCCGAATAAAAGCCT
TTTGAAACGTTTAATACGGTCTTCCGTTTGAAAAGCGGTAATATAACGAG
ATTCAGGGTCAAGTTCGAGTTGATGAAAAGCACTGTTCATATCTAATTTT
GTAAAGTATTTTGCACCGGATAATTTCCCAATAAGATCTTCAACCGTAGG
GGTAGGGTAACGAGTTCTCTCAATAGCCTCATTTGCGTTTCTCANTGAAA
AGCACTGTTCATATCTAATTTTGTAAAGTATTTTGCACCGGATAATTTCC
CAATAAGATCTTCAACCGTAGGGGTAGGGTAACG Coding sequence (CDS) from alignment at sc0002156:27471..28454 >TCONS_00039658 ID=TCONS_00039658|Name=TCONS_00039658|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0002156:27471..28454 (Clytia hemisphaerica)
GAAAAGGTAGATATGGTTCTTCTCAGCAGCGTAAACCATACCAAGGCATT
CGCATTCGATTTGGCTGTAGCGACATTCGACGTCTTTTAAAGCACGAGAC
GAGTAGTTAATAACATGTAAATCGTCTTTACCGGGAGTACGTTGTAATAA
AATAGCAGAAAGTCCGACAGGGCTAGCGTCGCAGTATACCATAGTCTCTT
TCTCGTCATCGAAATAAACAAGGTTTTTCTCTTCGGAAAGCATATCGATA
ATAATTCTAAACGACTTTTCACATTCATCACTACACTTAAAGTGAGCGTT
TTTCTTAAGCAACTGACGTATTGGATGAGTAAGCGTATTGTAATCGGGTA
TGAATCGTTTCAGGTAATTTGTAAAACCTAGGAAACTCCTAGCAGCATTA
GCATTTTCTGGTCGCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039658-exon-sc0002156-1491911889:27471..28454 | TCONS_00039658-exon-sc0002156-1491911889:27471..28454 | Clytia hemisphaerica | exon |
| TCONS_00039658-exon-sc0002156-1510915933:27471..28454 | TCONS_00039658-exon-sc0002156-1510915933:27471..28454 | Clytia hemisphaerica | exon |
| TCONS_00039658-exon-sc0002156-1575043694:27471..28454 | TCONS_00039658-exon-sc0002156-1575043694:27471..28454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002156 | supercontig | sc0002156:27471..28454 . |
Blast
The following BLAST results are available for this feature:
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