TCONS_00039653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039653
Unique NameTCONS_00039653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039653 ID=TCONS_00039653|Name=TCONS_00039653|organism=Clytia hemisphaerica|type=transcript|length=319bp
CGCACGGAGAGCTTTTCTATAGTATTCACCTGTCAAAAACAATCCATTTA
TGTTTGTTACTCTGGATAGACTAACATACATTTGACCTTCATTGAAATAT
CTTTGCGATAATAGTTCAAAACTTACTACTGCTGATTGAAGTGTTAGTCC
TTGGACTTCATGACTTGTACATACATAGGATAAGACCAAAGGAAATTTAG
TTCTTCGAACCATTAaaggtttttcctttttctttttctttttcttttcc
tttcttgTGTTAAAAGTGGCTTCTGCCCTTTCAATCAATATCCAATCATT
TTCTCTACACACATGAGCT
Run BLAST on NCBI

protein sequence of TCONS_00039653-protein

>TCONS_00039653-protein ID=TCONS_00039653-protein|Name=TCONS_00039653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
AHVCRENDWILIERAEATFNTRKEKKKKKKKEKPLMVRRTKFPLVLSYVC
TSHEVQGLTLQSAVVSFELLSQRYFNEGQMYVSLSRVTNINGLFLTGEYY
RKALRA
Run BLAST on NCBI

transcript from alignment at sc0002156:14631..14949

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039653 ID=TCONS_00039653|Name=TCONS_00039653|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at sc0002156:14631..14949 (Clytia hemisphaerica)
AGCTCATGTGTGTAGAGAAAATGATTGGATATTGATTGAAAGGGCAGAAG
CCACTTTTAACAcaagaaaggaaaagaaaaagaaaaagaaaaaggaaaaa
ccttTAATGGTTCGAAGAACTAAATTTCCTTTGGTCTTATCCTATGTATG
TACAAGTCATGAAGTCCAAGGACTAACACTTCAATCAGCAGTAGTAAGTT
TTGAACTATTATCGCAAAGATATTTCAATGAAGGTCAAATGTATGTTAGT
CTATCCAGAGTAACAAACATAAATGGATTGTTTTTGACAGGTGAATACTA
TAGAAAAGCTCTCCGTGCG

Coding sequence (CDS) from alignment at sc0002156:14631..14949

>TCONS_00039653 ID=TCONS_00039653|Name=TCONS_00039653|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0002156:14631..14949 (Clytia hemisphaerica)
GCTCATGTGTGTAGAGAAAATGATTGGATATTGATTGAAAGGGCAGAAGC
CACTTTTAACAcaagaaaggaaaagaaaaagaaaaagaaaaaggaaaaac
cttTAATGGTTCGAAGAACTAAATTTCCTTTGGTCTTATCCTATGTATGT
ACAAGTCATGAAGTCCAAGGACTAACACTTCAATCAGCAGTAGTAAGTTT
TGAACTATTATCGCAAAGATATTTCAATGAAGGTCAAATGTATGTTAGTC
TATCCAGAGTAACAAACATAAATGGATTGTTTTTGACAGGTGAATACTAT
AGAAAAGCTCTCCGTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023960XLOC_023960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039653-exon-sc0002156-1491911889:14631..14949TCONS_00039653-exon-sc0002156-1491911889:14631..14949Clytia hemisphaericaexon
TCONS_00039653-exon-sc0002156-1510915933:14631..14949TCONS_00039653-exon-sc0002156-1510915933:14631..14949Clytia hemisphaericaexon
TCONS_00039653-exon-sc0002156-1575043694:14631..14949TCONS_00039653-exon-sc0002156-1575043694:14631..14949Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039653-proteinTCONS_00039653-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002156supercontigsc0002156:14631..14949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7776	1.57234	0	0.873421	2.81023	1.71825	2.073	2.717	1.08699	1.29903	0	0.85908	1.19856	1.55911	0.549344	1.06517	0.308111	0.496258	1.02841	1.66863	1.68313	2.28122	0	0.421304	0.807041	1.79101	1.73141	1.42002	2.21597	0.437062
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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