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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039652 ID=TCONS_00039652|Name=TCONS_00039652|organism=Clytia hemisphaerica|type=transcript|length=1223bp
TGGTATTACCAGAGTTATATTTAAATCCCATTACTGTTCCAACTTGACCG
TTAACCAGTCTATCAGTAATGTCAATATTCTTGCAAATTAAAATTCGGGC
ACCTACTTTCAATTCTAATACACGGGCAAGACCACCTGTTTCTCTTGCTT
TTGCAGTTGACATCTTGGTTTGTTAAATGCTTAGGAACTTCATCTTGTGC
AAAAATCAAATGCTTTTCAGTTGGTAATTCATTGAGTGTTTCTATGTTAT
ACGCATCAACTGGTTTATTTTCTGCAAAAATATGACTTACATCAGAGGGA
TAATCTGGACTGTCTTTTGCAATAAATctagattttaaaagttcttcctT
TTCTTTGTCTAGCTCGCCTAAACGAATTCGATTCAAGAGGTCAATAATAT
CAATATCATCTCTCTGTCTCATGATCTCTGTCAATTCAGCGATTTGGAAT
TTACGCCATAATTCAAACCCAATTATACCATGTACTGTGGAGCTATCCGG
TTTGtagataaaatctttaaaaactgGTGGTAGTTGATATAAATCACCAC
AAAGTAGAACTGACTTTCCAGCAAAAGGTTTATCTACTTTAAATATTTTG
CGTAACCTTTCatcaatatttctaaacaaGCGGCTAGACACCATGGAAAT
TTCATCAATCATAATAACTTCCACACATGCaagtttcttttgcaaatttt
gctttGATGATGCATTCAGTGGAAATAAATCTGTAGTGAGAATAATCAAA
CCGCTGTGTATGGTGGTTCCATTGACATTAATTGCTGCTACGCCAGTTGG
TGCAAGaactaaaattctttcttttgtgGGTTCTCCTCCTCTATACATAA
GAAGTTTTGACAAAGAATGATAGATTGTTGTGAGTACGCCTCCGCCACCA
GTTAAGAAAATATGAAATGGCTCAATACATTTAGGCACTTTTGAAGAAAG
GTTTTTAACGAAATTTCTTCCCCATTTGTGAACTACATCAAAAACTTCTC
TTTGATGATGATTTAGAGATCTAATACGAGCATGTACTTCATTATAtggg
agcaaaattgattccatTGGAATTGAAGCTCTGGCATGAGTAGTGTCATT
GTTATCTTCATCATCCGATTCTTCATTATTGTTTGCTCTACTTTGAAGCT
CTGCATTTGTTTCATCATTCTCCTGCTGTTCAAAATCATTCATATTGAGA
ATCAAATCATTTCTGTACCTTTC Run BLAST on NCBI protein sequence of TCONS_00039652-protein >TCONS_00039652-protein ID=TCONS_00039652-protein|Name=TCONS_00039652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
ERYRNDLILNMNDFEQQENDETNAELQSRANNNEESDDEDNNDTTHARAS
IPMESILLPYNEVHARIRSLNHHQREVFDVVHKWGRNFVKNLSSKVPKCI
EPFHIFLTGGGGVLTTIYHSLSKLLMYRGGEPTKERILVLAPTGVAAINV
NGTTIHSGLIILTTDLFPLNASSKQNLQKKLACVEVIMIDEISMVSSRLF
RNIDERLRKIFKVDKPFAGKSVLLCGDLYQLPPVFKDFIYKPDSSTVHGI
IGFELWRKFQIAELTEIMRQRDDIDIIDLLNRIRLGELDKEKEELLKSRF
IAKDSPDYPSDVSHIFAENKPVDAYNIETLNELPTEKHLIFAQDEVPKHL
TNQDVNCKSKRNRWSCPCIRIESRCPNFNLQEY Run BLAST on NCBI transcript from alignment at sc0002156:13358..14580 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039652 ID=TCONS_00039652|Name=TCONS_00039652|organism=Clytia hemisphaerica|type=transcript|length=1223bp|location=Sequence derived from alignment at sc0002156:13358..14580 (Clytia hemisphaerica)
GAAAGGTACAGAAATGATTTGATTCTCAATATGAATGATTTTGAACAGCA
GGAGAATGATGAAACAAATGCAGAGCTTCAAAGTAGAGCAAACAATAATG
AAGAATCGGATGATGAAGATAACAATGACACTACTCATGCCAGAGCTTCA
ATTCCAatggaatcaattttgctcccaTATAATGAAGTACATGCTCGTAT
TAGATCTCTAAATCATCATCAAAGAGAAGTTTTTGATGTAGTTCACAAAT
GGGGAAGAAATTTCGTTAAAAACCTTTCTTCAAAAGTGCCTAAATGTATT
GAGCCATTTCATATTTTCTTAACTGGTGGCGGAGGCGTACTCACAACAAT
CTATCATTCTTTGTCAAAACTTCTTATGTATAGAGGAGGAGAACCcacaa
aagaaagaattttagttCTTGCACCAACTGGCGTAGCAGCAATTAATGTC
AATGGAACCACCATACACAGCGGTTTGATTATTCTCACTACAGATTTATT
TCCACTGAATGCATCATCaaagcaaaatttgcaaaagaaacttGCATGTG
TGGAAGTTATTATGATTGATGAAATTTCCATGGTGTCTAGCCGCttgttt
agaaatattgatGAAAGGTTACGCAAAATATTTAAAGTAGATAAACCTTT
TGCTGGAAAGTCAGTTCTACTTTGTGGTGATTTATATCAACTACCACcag
tttttaaagattttatctaCAAACCGGATAGCTCCACAGTACATGGTATA
ATTGGGTTTGAATTATGGCGTAAATTCCAAATCGCTGAATTGACAGAGAT
CATGAGACAGAGAGATGATATTGATATTATTGACCTCTTGAATCGAATTC
GTTTAGGCGAGCTAGACAAAGAAAaggaagaacttttaaaatctagATTT
ATTGCAAAAGACAGTCCAGATTATCCCTCTGATGTAAGTCATATTTTTGC
AGAAAATAAACCAGTTGATGCGTATAACATAGAAACACTCAATGAATTAC
CAACTGAAAAGCATTTGATTTTTGCACAAGATGAAGTTCCTAAGCATTTA
ACAAACCAAGATGTCAACTGCAAAAGCAAGAGAAACAGGTGGTCTTGCCC
GTGTATTAGAATTGAAAGTAGGTGCCCGAATTTTAATTTGCAAGAATATT
GACATTACTGATAGACTGGTTAACGGTCAAGTTGGAACAGTAATGGGATT
TAAATATAACTCTGGTAATACCA Coding sequence (CDS) from alignment at sc0002156:13358..14580 >TCONS_00039652 ID=TCONS_00039652|Name=TCONS_00039652|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0002156:13358..14580 (Clytia hemisphaerica)
GAAAGGTACAGAAATGATTTGATTCTCAATATGAATGATTTTGAACAGCA
GGAGAATGATGAAACAAATGCAGAGCTTCAAAGTAGAGCAAACAATAATG
AAGAATCGGATGATGAAGATAACAATGACACTACTCATGCCAGAGCTTCA
ATTCCAatggaatcaattttgctcccaTATAATGAAGTACATGCTCGTAT
TAGATCTCTAAATCATCATCAAAGAGAAGTTTTTGATGTAGTTCACAAAT
GGGGAAGAAATTTCGTTAAAAACCTTTCTTCAAAAGTGCCTAAATGTATT
GAGCCATTTCATATTTTCTTAACTGGTGGCGGAGGCGTACTCACAACAAT
CTATCATTCTTTGTCAAAACTTCTTATGTATAGAGGAGGAGAACCcacaa
aagaaagaattttagttCTTGCACCAACTGGCGTAGCAGCAATTAATGTC
AATGGAACCACCATACACAGCGGTTTGATTATTCTCACTACAGATTTATT
TCCACTGAATGCATCATCaaagcaaaatttgcaaaagaaacttGCATGTG
TGGAAGTTATTATGATTGATGAAATTTCCATGGTGTCTAGCCGCttgttt
agaaatattgatGAAAGGTTACGCAAAATATTTAAAGTAGATAAACCTTT
TGCTGGAAAGTCAGTTCTACTTTGTGGTGATTTATATCAACTACCACcag
tttttaaagattttatctaCAAACCGGATAGCTCCACAGTACATGGTATA
ATTGGGTTTGAATTATGGCGTAAATTCCAAATCGCTGAATTGACAGAGAT
CATGAGACAGAGAGATGATATTGATATTATTGACCTCTTGAATCGAATTC
GTTTAGGCGAGCTAGACAAAGAAAaggaagaacttttaaaatctagATTT
ATTGCAAAAGACAGTCCAGATTATCCCTCTGATGTAAGTCATATTTTTGC
AGAAAATAAACCAGTTGATGCGTATAACATAGAAACACTCAATGAATTAC
CAACTGAAAAGCATTTGATTTTTGCACAAGATGAAGTTCCTAAGCATTTA
ACAAACCAAGATGTCAACTGCAAAAGCAAGAGAAACAGGTGGTCTTGCCC
GTGTATTAGAATTGAAAGTAGGTGCCCGAATTTTAATTTGCAAGAATATT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039652-exon-sc0002156-1491911889:13358..14580 | TCONS_00039652-exon-sc0002156-1491911889:13358..14580 | Clytia hemisphaerica | exon |
| TCONS_00039652-exon-sc0002156-1510915933:13358..14580 | TCONS_00039652-exon-sc0002156-1510915933:13358..14580 | Clytia hemisphaerica | exon |
| TCONS_00039652-exon-sc0002156-1575043694:13358..14580 | TCONS_00039652-exon-sc0002156-1575043694:13358..14580 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002156 | supercontig | sc0002156:13358..14580 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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