TCONS_00039650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039650
Unique NameTCONS_00039650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039650 ID=TCONS_00039650|Name=TCONS_00039650|organism=Clytia hemisphaerica|type=transcript|length=641bp
ATACTGGTCAAGCATATtactttcgaaaattgaagtacTATCTTCAGGCA
ACTCATTAATTTCATCTTCACTAAGGCACATTCTAAATCTCTTTTCTGGG
ACATTAGTATTTGCAAAAGTTACACCTGGATAGAGCTTACGAAGCCATAG
CTGTGGCATACTGAGATAAACTGCTTCTTGCACTGACACTTCTCACTTTG
ACACATAGGCATGCGCaacagatttcatttgttcataTTTGTCACCGTCA
TTTTCAAAAGCATCTTTAACGGCTTGGGTCATAGCATGAGATATTTCATC
TTCAGTTTTAGAAAGATATGCACACATGTAAGTTGCAGCTTTGTAATAAT
TAAATACTGGTTGAATATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATACTGGTTGAATATCCAGATTTGCTTGCCAAGCTTTAAGACC
TTCTGTAAAGTAGTTATTGACAAAGCATGCATTTGTATTGCGTTTTAAGT
AAATGTGAAAATCTTCATCTTCAGATACAGAGAGAGCATATTCATAATCT
TCCTTCGGAATGTCTAATTCAGCTAGGACTTCATTGATGGT
Run BLAST on NCBI

protein sequence of TCONS_00039650-protein

>TCONS_00039650-protein ID=TCONS_00039650-protein|Name=TCONS_00039650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
TINEVLAELDIPKEDYEYALSVSEDEDFHIYLKRNTNACFVNNYFTEGLK
AWQANLDIQPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWIFNQYLIIT
KLQLTCVHIFLKLKMKYLML
Run BLAST on NCBI

transcript from alignment at sc0002156:12097..12737

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039650 ID=TCONS_00039650|Name=TCONS_00039650|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0002156:12097..12737 (Clytia hemisphaerica)
ACCATCAATGAAGTCCTAGCTGAATTAGACATTCCGAAGGAAGATTATGA
ATATGCTCTCTCTGTATCTGAAGATGAAGATTTTCACATTTACTTAAAAC
GCAATACAAATGCATGCTTTGTCAATAACTACTTTACAGAAGGTCTTAAA
GCTTGGCAAGCAAATCTGGATATTCAACCAGTATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATCTGGATATTCAACCAGTATTTAATTATTACA
AAGCTGCAACTTACATGTGTGCATATCTTTCTAAAACTGAAGATGAAATA
TCTCATGCTATGACCCAAGCCGTTAAAGATGCTTTTGAAAATGACGGTGA
CAAAtatgaacaaatgaaatctgttGCGCATGCCTATGTGTCAAAGTGAG
AAGTGTCAGTGCAAGAAGCAGTTTATCTCAGTATGCCACAGCTATGGCTT
CGTAAGCTCTATCCAGGTGTAACTTTTGCAAATACTAATGTCCCAGAAAA
GAGATTTAGAATGTGCCTTAGTGAAGATGAAATTAATGAGTTGCCTGAAG
ATAgtacttcaattttcgaaagtaATATGCTTGACCAGTAT

Coding sequence (CDS) from alignment at sc0002156:12097..12737

>TCONS_00039650 ID=TCONS_00039650|Name=TCONS_00039650|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0002156:12097..12737 (Clytia hemisphaerica)
ACCATCAATGAAGTCCTAGCTGAATTAGACATTCCGAAGGAAGATTATGA
ATATGCTCTCTCTGTATCTGAAGATGAAGATTTTCACATTTACTTAAAAC
GCAATACAAATGCATGCTTTGTCAATAACTACTTTACAGAAGGTCTTAAA
GCTTGGCAAGCAAATCTGGATATTCAACCAGTATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATCTGGATATTCAACCAGTATTTAATTATTACA
AAGCTGCAACTTACATGTGTGCATATCTTTCTAAAACTGAAGATGAAATA
TCTCATGCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023957XLOC_023957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039650-exon-sc0002156-1491911889:12097..12737TCONS_00039650-exon-sc0002156-1491911889:12097..12737Clytia hemisphaericaexon
TCONS_00039650-exon-sc0002156-1510915933:12097..12737TCONS_00039650-exon-sc0002156-1510915933:12097..12737Clytia hemisphaericaexon
TCONS_00039650-exon-sc0002156-1575043694:12097..12737TCONS_00039650-exon-sc0002156-1575043694:12097..12737Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039650-proteinTCONS_00039650-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002156supercontigsc0002156:12097..12737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346065	0.71713	0.681139	0.845852	0.124137	0.0946889	0.17353	0.49347	0.288365	0.322034	0.618743	0.361136	0.566655	0.329686	0.220371	0.541019	0.236143	0.142956	0.418451	0.303933	0.831825	1.01084	0.591853	0.327304	0.115695	0.396529	1.1495	0.131908	0.284127	0.425404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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