TCONS_00039646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039646
Unique NameTCONS_00039646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039646 ID=TCONS_00039646|Name=TCONS_00039646|organism=Clytia hemisphaerica|type=transcript|length=488bp
aaaaaatatcaaccgATTGCACTGTAGGCGGGTGAAataaatattgtatt
tttacaaaatatttgttGATATGTGTCGCGCCGCCCAAAAGGCAACCAGG
ACCACACAACAACCAGAATATGCATCCAAACTTCTAACATTGAACAAACA
CGTTTTAACGAAGCTGCTTCTAAGCTGGACAAAACCATGCCATATATAAC
TTCCCTAAAAACCCTATTTTCACAACAATGCAATATGTCTAAAATATCGA
TGAAAATAtgatcaatataaaaaaaaatctcgACGAAAACCAAATTCACA
TTTACATAGATACACCTCTTATCCGTGTTTCTGAAAACCAGGCAggattt
aaaaatctgaaatatcGCTTGGATGCAagattgtttttaaaactcACAAG
TGGGAAAACGGGAACTTCAGGAACTTTCTTAAATTCAGCTAGGATTGCAT
AAGAAAAGAGATTAGAACGGTTGACCTTTTTGCTGCGA
Run BLAST on NCBI

transcript from alignment at sc0002155:22514..23166-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039646 ID=TCONS_00039646|Name=TCONS_00039646|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0002155:22514..23166- (Clytia hemisphaerica)
AAAAAATATCAACCGATTGCACTGTAGGCGGGTGAAATAAATATTGTATT
TTTACAAAATATTTGTTGATATGTGTCGCGCCGCCCAAAAGGCAACCAGA
NCGAAAACCTTTTACAAAACGTTGTAAACACACACGTTTAAGCGTATTAA
TATATAGACTCTCGACAAAAAAAATATTAACCGATTGCACTGTAGGCGGG
TGAAATAAATATTGTATTTTTACAAAATATTTGTTAATATGTGTCGCACC
CAAAAGGCAACCAGGACCACACAACAACCAGAATATGCATCCAAACTTCT
AACATTGAACAAACACGTTTTAACGAAGCTGCTTCTAAGCTGGACAAAAC
CATGCCATATATAACTTCCCTAAAAACCCTATTTTCACAACAATGCAATA
TGTCTAAAATATCGATGAAAATATGATCAATATAAAAAAAAATCTCGACG
AAAACCAAATTCACATTTACATAGATACACCTCTTATCCGTGTTTCTGAA
AACCAGGCAGGATTTAAAAATCTGAAATATCGCTTGGATGCAAGATTGTT
TTTAAAACTCACAAGTGGGAAAACGGGAACTTCAGGAACTTTCTTAAATT
CAGCTAGGATTGCATAAGAAAAGAGATTAGAACGGTTGACCTTTTTGCTG
CGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023953XLOC_023953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039646-exon-sc0002155-1575043694:23076..23166TCONS_00039646-exon-sc0002155-1575043694:23076..23166Clytia hemisphaericaexon
TCONS_00039646-exon-sc0002155-1575043694:22514..22910TCONS_00039646-exon-sc0002155-1575043694:22514..22910Clytia hemisphaericaexon
TCONS_00039646-exon-sc0002155-1510915933:23076..23166TCONS_00039646-exon-sc0002155-1510915933:23076..23166Clytia hemisphaericaexon
TCONS_00039646-exon-sc0002155-1510915933:22514..22910TCONS_00039646-exon-sc0002155-1510915933:22514..22910Clytia hemisphaericaexon
TCONS_00039646-exon-sc0002155-1491911889:23076..23166TCONS_00039646-exon-sc0002155-1491911889:23076..23166Clytia hemisphaericaexon
TCONS_00039646-exon-sc0002155-1491911889:22514..22910TCONS_00039646-exon-sc0002155-1491911889:22514..22910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002155supercontigsc0002155:22514..23166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.169141	0	0	0	3.9965	2.6278	0	0	8.63467	7.47344	1.61811	0.798382	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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